DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir40a and Gria4

DIOPT Version :9

Sequence 1:NP_610140.4 Gene:Ir40a / 35449 FlyBaseID:FBgn0259683 Length:732 Species:Drosophila melanogaster
Sequence 2:XP_006509904.1 Gene:Gria4 / 14802 MGIID:95811 Length:912 Species:Mus musculus


Alignment Length:578 Identity:123/578 - (21%)
Similarity:215/578 - (37%) Gaps:138/578 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly   162 TRPRKKAFRIYYNQARPCSDSQLQLVNWYDGDNLGLQRIPLLPTALSVYANFKGRTFRVPVFHSP 226
            |.|||..:                   |.|.|.|.|  |...||..:..|..:.||..|......
Mouse   382 TGPRKVGY-------------------WNDMDKLVL--IQDAPTLGNDTAAIENRTVVVTTIMES 425

  Fly   227 PWFWVTYCNNSFEEDEEFNSLDSIEKRKVRVTGGRDHRLLMLLSKHMNFRFKYIEAPGRTQGSMR 291
            |  :|.|..|    .|.|...|..|        |....|...::||:..::|....|....|: |
Mouse   426 P--YVMYKKN----HEMFEGNDKYE--------GYCVDLASEIAKHIGIKYKIAIVPDGKYGA-R 475

  Fly   292 SEDGKDSNDSFTGGIGLLQSGQADFFLGDVGLSWERRKAIEFS--FFTLADSGAFATHAPRRLNE 354
            ..|.|..|    |.:|.|..|:|:..:..:.::..|.:.|:||  |.:|..|  .....|::...
Mouse   476 DADTKIWN----GMVGELVYGKAEIAIAPLTITLVREEVIDFSKPFMSLGIS--IMIKKPQKSKP 534

  Fly   355 AL-AIMRPFKQDIWPHLILTIIFSGPIFYGIIAL--------PYIWRRRWANSDVEHLGELYIHM 410
            .: :.:.|...:||    :.|:|:   :.|:..:        ||.|          |..|     
Mouse   535 GVFSFLDPLAYEIW----MCIVFA---YIGVSVVLFLVSRFSPYEW----------HTEE----- 577

  Fly   411 TYLKEITPRLLKLKPRTVLSAHQMPHQ--LFQKCIWFTLRLFLKQSCNELHNGYRAKFLTIVYWI 473
                   |...|..|     :.|.|::  :|.. :||:|..|::|.|:........:.:..|:|.
Mouse   578 -------PEDGKEGP-----SDQPPNEFGIFNS-LWFSLGAFMQQGCDISPRSLSGRIVGGVWWF 629

  Fly   474 AATYVLADVYSAQLTSQFARPAREPPINTLQRLQAAMIHDGYRLYVEKESSSLEMLENGT--ELF 536
             .|.::...|:|.|.:.........||.:.:.|            .::...:...|::|:  |.|
Mouse   630 -FTLIIISSYTANLAAFLTVERMVSPIESAEDL------------AKQTEIAYGTLDSGSTKEFF 681

  Fly   537 R--------QLYALMRQQVINDPQGFFIDSVEAGIKLIAEGGEDKAVLGGRETLFFNVQQYGSNN 593
            |        :::..||..   :|..|...:.|...::....|:...:|......:.. |:...:.
Mouse   682 RRSKIAVYEKMWTYMRSA---EPSVFTRTTAEGVARVRKSKGKFAFLLESTMNEYIE-QRKPCDT 742

  Fly   594 FQLSQKLYTRYSAVAVQIGCPFLGSLNNVLMQLFESGILDKMTAAEYAKQYQEVEATRIYKGSVQ 658
            .::...|.::...||...|......:|..:::|.|:|:|||:.    .|.:.:       ||...
Mouse   743 MKVGGNLDSKGYGVATPKGSSLRTPVNLAVLKLSEAGVLDKLK----NKWWYD-------KGECG 796

  Fly   659 AKNSEAYSRTESYDSTVISPLNLRMLQGAFIALGVGSLA-AGVILLLEIVFIKLDQAR 715
            .|:|.:..:|        |.|:|..:.|.|..| ||.|. |.::.|:|..:....:|:
Mouse   797 PKDSGSKDKT--------SALSLSNVAGVFYIL-VGGLGLAMLVALIEFCYKSRAEAK 845

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir40aNP_610140.4 PBP2_LTTR_substrate 216..338 CDD:330233 32/123 (26%)
Periplasmic_Binding_Protein_Type_2 297..>391 CDD:328725 22/104 (21%)
Periplasmic_Binding_Protein_Type_2 <496..637 CDD:328725 27/150 (18%)
Gria4XP_006509904.1 PBP1_iGluR_AMPA_GluR4 28..400 CDD:380611 9/38 (24%)
PBP2_iGluR_AMPA_GluR4 414..795 CDD:270445 94/464 (20%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167846576
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.840

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