DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir40a and grin2cb

DIOPT Version :9

Sequence 1:NP_610140.4 Gene:Ir40a / 35449 FlyBaseID:FBgn0259683 Length:732 Species:Drosophila melanogaster
Sequence 2:XP_009305071.2 Gene:grin2cb / 100333648 ZFINID:ZDB-GENE-100308-2 Length:1328 Species:Danio rerio


Alignment Length:747 Identity:140/747 - (18%)
Similarity:244/747 - (32%) Gaps:239/747 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly    50 ILALPSLALSD-----------GVCQKERNVYLDDFLQRLHRSNYKSVVFSQTELFFQHIEENLQ 103
            |..:||||:.:           ||.....:.:.....||:...  .:::......|.:|.....:
Zfish   259 IWIVPSLAVGNPEAAPPASFPVGVISIITDRWRKTLRQRVREG--VAIIVKGVHSFHKHRGFIPE 321

  Fly   104 GANECISLILDEPNQLLNSLHDRHL-----GHRLSLFIFYWGARWPPSSRVIRFREPLRVVVVTR 163
            |.::|.|.:....|   |||. ||:     .|: .|.....|....||           :|::..
Zfish   322 GHSDCSSPVKSYAN---NSLF-RHMLNVSWEHK-DLSFNSDGYLTNPS-----------MVIIAL 370

  Fly   164 PRKKAFRIYYNQARPCSDSQLQLVNWYDGDNLGLQRIPLLPTALSVYANF-----KGRTFRVPVF 223
            .|               ::....|..|:|..|.: |.|:.|.    |.:|     ..|...|...
Zfish   371 DR---------------ENHWDKVGSYEGGILQM-RYPVWPR----YGSFLEPVSDNRHLTVATL 415

  Fly   224 HSPPWFWV--------TYCNNSFEEDEEFNSLDSI----EKRKVRVTGGRDHRLLMLLSKHMNFR 276
            ...|:..|        |...|:.....:.|..:||    |........|....:|..||:.:.|.
Zfish   416 EERPFVIVESVDPATGTCVRNTVPCRRQSNRTESIIGHTEPYTKLCCKGFCIDILKKLSRTIKFS 480

  Fly   277 FK-YIEAPGRTQGSMRSEDGKDSNDSFTGGIGLLQSGQADFFLGDVGLSWERRKAIEFSFFTLAD 340
            :. |:...|:        .||.....:.|.||.:...:||..:|.:.::.||.:.::|| ....:
Zfish   481 YDLYLVTNGK--------HGKMVRGVWNGMIGEVFYKRADMAIGSLTINEERSEIVDFS-VPFVE 536

  Fly   341 SGAFATHAPRRLNEAL---AIMRPFKQDIWPHLI---LTII--------FSGPIFYGIIALPYIW 391
            :|.....|  |.|..:   |.:.|:...:|..:.   ||::        :..|:.|.        
Zfish   537 TGISVMVA--RSNGTVSPSAFLEPYSPAVWVMMFVMCLTVVAVTVFVFEYFSPVGYN-------- 591

  Fly   392 RRRWANSDVEHLGELYIHMTYLKEITPRLLKLKPRTVLSAHQM--PHQLFQKCIWFTLRLFLKQS 454
                                              |:::||...  |.....|.:|....:....|
Zfish   592 ----------------------------------RSLVSAKAPGGPTFTIGKSVWLLWGIVFNNS 622

  Fly   455 CN-ELHNGYRAKFLTIVYWIAATYVLADVYSAQLTS-----------------QFARPARE-PPI 500
            .. |...|..:|.:.:|:...|...||. |:|.|.:                 :|.:|... ||.
Zfish   623 VPIENPKGTTSKIMVLVWAFFAVIFLAS-YTANLAAFMIQEQYIDTVSGLSDKKFQKPQEHYPPF 686

  Fly   501 --------NTLQRLQAAM--IHDGYRLYVEK-ESSSLEMLENGTELFRQLYALMRQQVINDPQGF 554
                    :|.:.:::..  :|.....|.:| ...:|..|:.| :|...:|   ...|:|     
Zfish   687 RFGTVPNGSTERNIRSNYPDMHTHMIKYNQKGVEEALNSLKTG-KLDAFIY---DAAVLN----- 742

  Fly   555 FIDSVEAGIKLIAEG-GEDKAVLGGRETLFFNVQQYGSNNFQLSQKLYTRYSAVAVQIGCPFLGS 618
            ::...:.|.||:..| |:..|..|           ||                :|:|....:...
Zfish   743 YMAGKDEGCKLVTIGSGKVFATTG-----------YG----------------IALQKDSRWKRP 780

  Fly   619 LNNVLMQLFESGILDKMTAAEYAKQYQEVEATRIYKGSVQAKNSEAYSRTESYDSTVISPLNLRM 683
            ::..|:|....|            ..|.:|...: .|..|.:.:|..|          |.|::..
Zfish   781 IDLALLQFLGDG------------DTQRLETVWL-SGICQNEKNEVMS----------SKLDIDN 822

  Fly   684 LQGAFIALGVGSLAAGVILLL----EIVFIKL 711
            :.|.|..|.|   |.|:.||:    .:::.||
Zfish   823 MAGVFYMLLV---AMGLSLLVFAWEHLLYWKL 851

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir40aNP_610140.4 PBP2_LTTR_substrate 216..338 CDD:330233 29/134 (22%)
Periplasmic_Binding_Protein_Type_2 297..>391 CDD:328725 21/107 (20%)
Periplasmic_Binding_Protein_Type_2 <496..637 CDD:328725 27/153 (18%)
grin2cbXP_009305071.2 PBP1_iGluR_NMDA_NR2 37..396 CDD:107373 33/170 (19%)
PBP2_iGluR_NMDA_Nr2 407..808 CDD:270436 89/503 (18%)
NMDAR2_C 845..>932 CDD:313729 2/7 (29%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170591635
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.930

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