DRSC/TRiP Functional Genomics Resources

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Protein Alignment Clamp and ZNF20

DIOPT Version :10

Sequence 1:NP_001014498.1 Gene:Clamp / 35445 FlyBaseID:FBgn0032979 Length:566 Species:Drosophila melanogaster
Sequence 2:NP_066966.2 Gene:ZNF20 / 7568 HGNCID:12992 Length:532 Species:Homo sapiens


Alignment Length:477 Identity:124/477 - (25%)
Similarity:189/477 - (39%) Gaps:147/477 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly   181 QNIIGNGQMGQIQIVSSDTLEPVQQ-SVMQQQQHESKASKCINCGSSMLQ-----QSKRKGPKQV 239
            :|:...|:..::|.:..:...|.:. |:|:::..|||.|.  :||.|..|     .:::..|...
Human    41 KNLTSVGKTWKVQNIEDEYKNPRRNLSLMREKLCESKESH--HCGESFNQIADDMLNRKTLPGIT 103

  Fly   240 RCESCMQAE-QTAQQQQQLFVAQD-GQMAHPVQIISTTP-------QAQAQLQQIVAAQTGGTTP 295
            .|||.:..| .|........:..| |..:...|.....|       :|.:.|....:.....|..
Human   104 PCESSVCGEVGTGHSSLNTHIRADTGHKSSEYQEYGENPYRNKECKKAFSYLDSFQSHDKACTKE 168

  Fly   296 K--------------------REASSGSGHHPVKKRNSQQMTKCQKCNGS----GVVLVGQHSHA 336
            |                    |...||.|.:           ||:.|..:    .:.|:.:.   
Human   169 KPYDGKECTETFISHSCIQRHRVMHSGDGPY-----------KCKFCGKAFYFLNLCLIHER--- 219

  Fly   337 SHSGV--------GGSVKQSVTVKT-----------ECLSCRN----PS------------KPFS 366
            .|:||        |.:..:|.|:..           ||..|.|    ||            ||:.
Human   220 IHTGVKPYKCKQCGKAFTRSTTLPVHERTHTGVNADECKECGNAFSFPSEIRRHKRSHTGEKPYE 284

  Fly   367 CNICGGLFSRYSSLWSHKKLHSGEKNYKCSICGLAFAKAVYLKNHARIHTGEKPYKCQTCGMQF- 430
            |..||.:|..:||:..||..|:|||.|:|..||.||....:|:.|.|.|||||||:|:.||..| 
Human   285 CKQCGKVFISFSSIQYHKMTHTGEKPYECKQCGKAFRCGSHLQKHGRTHTGEKPYECRQCGKAFR 349

  Fly   431 -----------------------------------------SQSPH--------------LKNHE 440
                                                     .:.||              |:.||
Human   350 CTSDLQRHEKTHTEDKPYGCKQCGKGFRCASQLQIHERTHSGEKPHECKECGKVFKYFSSLRIHE 414

  Fly   441 RTHSGERPYVCGVCDKGFARHATLWNHRRIHTGEKPYKCEICGSAFSQAAHLKNHAKVHSGEKPY 505
            |||:||:|:.|..|.|.|...::|..|.|.|||:|||:|::||.||:.::.::.|.:.|:|||||
Human   415 RTHTGEKPHECKQCGKAFRYFSSLHIHERTHTGDKPYECKVCGKAFTCSSSIRYHERTHTGEKPY 479

  Fly   506 KCEICSAAFADRFALKRHRGIH 527
            :|:.|..||...: ::.|...|
Human   480 ECKHCGKAFISNY-IRYHERTH 500

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ClampNP_001014498.1 COG5048 <359..498 CDD:227381 67/210 (32%)
C2H2 Zn finger 367..387 CDD:275368 8/19 (42%)
C2H2 Zn finger 395..415 CDD:275368 8/19 (42%)
zf-H2C2_2 407..432 CDD:463886 14/66 (21%)
C2H2 Zn finger 423..443 CDD:275368 10/75 (13%)
C2H2 Zn finger 451..471 CDD:275368 7/19 (37%)
COG5048 475..>529 CDD:227381 21/53 (40%)
C2H2 Zn finger 479..499 CDD:275368 6/19 (32%)
C2H2 Zn finger 507..527 CDD:275368 5/19 (26%)
ZNF20NP_066966.2 KRAB 6..47 CDD:460171 1/5 (20%)
C2H2 Zn finger 108..127 CDD:275368 2/18 (11%)
COG5048 115..525 CDD:227381 105/401 (26%)
C2H2 Zn finger 146..165 CDD:275368 2/18 (11%)
C2H2 Zn finger 173..193 CDD:275368 1/19 (5%)
C2H2 Zn finger 201..221 CDD:275370 3/22 (14%)
C2H2 Zn finger 229..249 CDD:275368 3/19 (16%)
C2H2 Zn finger 257..277 CDD:275368 5/19 (26%)
C2H2 Zn finger 285..305 CDD:275368 8/19 (42%)
C2H2 Zn finger 313..333 CDD:275368 8/19 (42%)
C2H2 Zn finger 341..361 CDD:275368 4/19 (21%)
C2H2 Zn finger 369..389 CDD:275368 0/19 (0%)
C2H2 Zn finger 397..417 CDD:275368 4/19 (21%)
C2H2 Zn finger 425..445 CDD:275368 7/19 (37%)
C2H2 Zn finger 453..473 CDD:275368 6/19 (32%)
C2H2 Zn finger 481..500 CDD:275368 5/19 (26%)
C2H2 Zn finger 508..528 CDD:275368
Blue background indicates that the domain is not in the aligned region.

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