DRSC/TRiP Functional Genomics Resources

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Protein Alignment Clamp and Gm14322

DIOPT Version :10

Sequence 1:NP_001014498.1 Gene:Clamp / 35445 FlyBaseID:FBgn0032979 Length:566 Species:Drosophila melanogaster
Sequence 2:NP_001230832.1 Gene:Gm14322 / 626802 MGIID:3652185 Length:358 Species:Mus musculus


Alignment Length:346 Identity:111/346 - (32%)
Similarity:157/346 - (45%) Gaps:81/346 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly   229 QQSKRKGPKQVRCESCMQAEQTAQ--QQQQLFVAQDGQMAHPVQIISTTPQAQAQLQQIVAAQTG 291
            |.|:..|    |.|....|||..:  |..:.|..:.|:..|.::                  .||
Mouse    57 QTSRSHG----RHERSCSAEQPPEFIQCGKAFAYESGRQRHQIK------------------HTG 99

  Fly   292 GTTPKREASSGSGHH-------PVKKRNSQQM-------TKCQKCNGSGVVLVGQHSH-----AS 337
            |.           ||       ..:.||..|:       .|...||..|... .:.||     .:
Mouse   100 GK-----------HHDCNQCGKDFRTRNVPQIHKRTHTGEKPYDCNQYGKAF-ARISHLRVHKRT 152

  Fly   338 HSGVGGSVKQSVTVKTECLSCRNPSKPFSCNICGGLFSRYSSLWSHKKLHSGEKNYKCSICGLAF 402
            |:|                     .||:.||.||..|:..|.|..||:.|:|||.|:|:.||.||
Mouse   153 HTG---------------------EKPYECNQCGKAFASSSDLQKHKRTHTGEKPYECNQCGKAF 196

  Fly   403 AKAVYLKNHARIHTGEKPYKCQTCGMQFSQSPHLKNHERTHSGERPYVCGVCDKGFARHATLWNH 467
            |::.:|:.|.|.|.|:|.|:|..||..|:||.:|:.|:.||:||:.|.|..|.|.||..:.|..|
Mouse   197 AQSSHLRIHKRTHAGDKRYECNQCGKAFTQSNNLQIHKGTHAGEKRYECNQCGKAFASSSDLQKH 261

  Fly   468 RRIHTGEKPYKCEICGSAFSQAAHLKNHAKVHSGEKPYKCEICSAAFADRFALKRHRGIH----- 527
            :|.|||||||:|..||.||:::..|:.|.:.|:|||||:|:.|..|||..:.|:.|...|     
Mouse   262 KRTHTGEKPYECNQCGKAFAKSCDLQKHKRTHTGEKPYECKQCGKAFAVSYTLQIHNRTHTGEKP 326

  Fly   528 QKYGQTAPRQTSSDGMIVHKQ 548
            .:..|.......|..:.:|||
Mouse   327 YECKQCGKAFAQSSNLRIHKQ 347

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ClampNP_001014498.1 COG5048 <359..498 CDD:227381 64/138 (46%)
C2H2 Zn finger 367..387 CDD:275368 9/19 (47%)
C2H2 Zn finger 395..415 CDD:275368 9/19 (47%)
zf-H2C2_2 407..432 CDD:463886 11/24 (46%)
C2H2 Zn finger 423..443 CDD:275368 8/19 (42%)
C2H2 Zn finger 451..471 CDD:275368 8/19 (42%)
COG5048 475..>529 CDD:227381 24/58 (41%)
C2H2 Zn finger 479..499 CDD:275368 7/19 (37%)
C2H2 Zn finger 507..527 CDD:275368 7/19 (37%)
Gm14322NP_001230832.1 KRAB 3..44 CDD:460171
C2H2 Zn finger 77..96 CDD:275368 4/18 (22%)
C2H2 Zn finger 105..125 CDD:275368 3/19 (16%)
C2H2 Zn finger 133..153 CDD:275368 5/20 (25%)
COG5048 <138..347 CDD:227381 85/230 (37%)
C2H2 Zn finger 161..181 CDD:275368 9/19 (47%)
C2H2 Zn finger 189..209 CDD:275368 9/19 (47%)
C2H2 Zn finger 217..237 CDD:275368 8/19 (42%)
C2H2 Zn finger 245..265 CDD:275368 8/19 (42%)
C2H2 Zn finger 273..293 CDD:275368 7/19 (37%)
C2H2 Zn finger 301..321 CDD:275368 7/19 (37%)
C2H2 Zn finger 329..349 CDD:275368 5/19 (26%)
Blue background indicates that the domain is not in the aligned region.

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