DRSC/TRiP Functional Genomics Resources

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Protein Alignment Clamp and ZNF248

DIOPT Version :10

Sequence 1:NP_001014498.1 Gene:Clamp / 35445 FlyBaseID:FBgn0032979 Length:566 Species:Drosophila melanogaster
Sequence 2:NP_066383.1 Gene:ZNF248 / 57209 HGNCID:13041 Length:579 Species:Homo sapiens


Alignment Length:539 Identity:137/539 - (25%)
Similarity:213/539 - (39%) Gaps:127/539 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    52 NGNGG--TVNLAQLATTDDNKTCYIAQPVG--GYNYALVNGMPLNQGAALGIATVDAQGRIQIVN 112
            ||:.|  |.||.    ||         ||.  .|.|.:.:...:|.....|:......     .:
Human   115 NGDRGSKTFNLG----TD---------PVSLRNYPYKICDSCEMNLKNISGLIISKKN-----CS 161

  Fly   113 QNKPIAANT--------------ISNISFKCDVCSDMFPHLALLNAHKRMHTDG-EQQQQQQHNA 162
            :.||...|.              |...|:|.|...:      .:|.|:.:.... .|..:...|.
Human   162 RKKPDEFNVCEKLLLDIRHEKIPIGEKSYKYDQKRN------AINYHQDLSQPSFGQSFEYSKNG 220

  Fly   163 QAGGDSIAVVSAQGLVQAQNIIGNGQMGQIQIVSSDTLEPVQQSVMQQQQHESKASKCINCGSSM 227
            |...|..|..:.:.....:.:....:.|:..|      |.::.::.|:...|.:...|..||.|.
Human   221 QGFHDEAAFFTNKRSQIGETVCKYNECGRTFI------ESLKLNISQRPHLEMEPYGCSICGKSF 279

  Fly   228 LQQSK--------RKGP------KQVRCESCMQAEQTAQQQQQLFVAQDGQMAHPV----QIIST 274
            ....:        :..|      .::.|::            ..|:...|.....:    ::...
Human   280 CMNLRFGHQRALTKDNPYEYNEYGEIFCDN------------SAFIIHQGAYTRKILREYKVSDK 332

  Fly   275 TPQAQAQLQ-QIVAAQTGGTTPKREASSGSGHHPVKKRNSQQMTKCQKCNGSGVVLVGQHSHASH 338
            |.:..|.|: |||  ..||   |....:.:|.:..||.:..|:.:                  :|
Human   333 TWEKSALLKHQIV--HMGG---KSYDYNENGSNFSKKSHLTQLRR------------------AH 374

  Fly   339 SGVGGSVKQSVTVKTECLSCRNPSKPFSCNICGGLFSRYSSLWSHKKLHSGEKNYKCSICGLAFA 403
            :|                     .|.|.|..||..|...|:|..|::.|:|||.|:|:.||.||.
Human   375 TG---------------------EKTFECGECGKTFWEKSNLTQHQRTHTGEKPYECTECGKAFC 418

  Fly   404 KAVYLKNHARIHTGEKPYKCQTCGMQFSQSPHLKNHERTHSGERPYVCGVCDKGFARHATLWNHR 468
            :..:|.||.|.|||||||:|:.||..|....:|..|:|||:||:||.|..|.|.|...:.|..|:
Human   419 QKPHLTNHQRTHTGEKPYECKQCGKTFCVKSNLTEHQRTHTGEKPYECNACGKSFCHRSALTVHQ 483

  Fly   469 RIHTGEKPYKCEICGSAFSQAAHLKNHAKVHSGEKPYKCEICSAAFADRFALKRHRGIH---QKY 530
            |.||||||:.|..||.:|...::|..|.:.|:|||||||..|...|.::.||.:|:..|   :.|
Human   484 RTHTGEKPFICNECGKSFCVKSNLIVHQRTHTGEKPYKCNECGKTFCEKSALTKHQRTHTGEKPY 548

  Fly   531 GQTAPRQTSSDGMIVHKQE 549
            ...|..:|.|...::.|.:
Human   549 ECNACGKTFSQRSVLTKHQ 567

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ClampNP_001014498.1 COG5048 <359..498 CDD:227381 62/138 (45%)
C2H2 Zn finger 367..387 CDD:275368 7/19 (37%)
C2H2 Zn finger 395..415 CDD:275368 9/19 (47%)
zf-H2C2_2 407..432 CDD:463886 15/24 (63%)
C2H2 Zn finger 423..443 CDD:275368 7/19 (37%)
C2H2 Zn finger 451..471 CDD:275368 7/19 (37%)
COG5048 475..>529 CDD:227381 22/56 (39%)
C2H2 Zn finger 479..499 CDD:275368 6/19 (32%)
C2H2 Zn finger 507..527 CDD:275368 6/19 (32%)
ZNF248NP_066383.1 KRAB 8..68 CDD:214630
C2H2 Zn finger 220..236 CDD:275368 3/15 (20%)
C2H2 Zn finger 244..264 CDD:275368 4/25 (16%)
C2H2 Zn finger 358..374 CDD:275368 4/33 (12%)
C2H2 Zn finger 382..402 CDD:275368 7/19 (37%)
COG5048 406..>472 CDD:227381 33/65 (51%)
C2H2 Zn finger 410..430 CDD:275368 9/19 (47%)
C2H2 Zn finger 438..458 CDD:275368 7/19 (37%)
COG5048 462..>523 CDD:227381 28/60 (47%)
C2H2 Zn finger 466..486 CDD:275368 7/19 (37%)
C2H2 Zn finger 494..514 CDD:275368 6/19 (32%)
zf-H2C2_2 506..529 CDD:463886 11/22 (50%)
C2H2 Zn finger 522..542 CDD:275368 6/19 (32%)
zf-H2C2_2 534..559 CDD:463886 7/24 (29%)
C2H2 Zn finger 550..570 CDD:275368 4/18 (22%)
Blue background indicates that the domain is not in the aligned region.

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