DRSC/TRiP Functional Genomics Resources

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Protein Alignment Clamp and ZSCAN2

DIOPT Version :10

Sequence 1:NP_001014498.1 Gene:Clamp / 35445 FlyBaseID:FBgn0032979 Length:566 Species:Drosophila melanogaster
Sequence 2:XP_024305746.1 Gene:ZSCAN2 / 54993 HGNCID:20994 Length:645 Species:Homo sapiens


Alignment Length:464 Identity:132/464 - (28%)
Similarity:196/464 - (42%) Gaps:140/464 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly   134 DMFPHLA------LLNAHKRMHTDGEQ--------QQQQQHNAQAGGDSIAVVSAQGLVQAQNII 184
            |||.:.:      :.......|:|||.        |:.|.|:  .|.|...|||.          
Human   181 DMFENESRKIFSEMPEGESAQHSDGESDFERDAGIQRLQGHS--PGEDHGEVVSQ---------- 233

  Fly   185 GNGQMGQIQIVSSDTLEPVQQSVMQQQQHESKASKCINCGSSMLQQS-------KRKGPKQVRCE 242
             :.::||        |..:|.:.:.::.:|     |..||.:..::|       ...|.|..:|:
Human   234 -DREVGQ--------LIGLQGTYLGEKPYE-----CPQCGKTFSRKSHLITHERTHTGEKYYKCD 284

  Fly   243 SCMQAEQTAQQQQQLFVAQDGQMAHPVQIISTTPQAQAQLQQIVAAQTGGTTPKREASSGSGHHP 307
            .|.:                                         :.:.|:...|..::.:|..|
Human   285 ECGK-----------------------------------------SFSDGSNFSRHQTTHTGEKP 308

  Fly   308 VKKRNSQQMTKCQKC----NGSGVVLVGQHSHASHSGVGGSVKQSVTVKTECLSC-----RNPS- 362
            .         ||:.|    :.|..::..|..|....            ..:|..|     |:|: 
Human   309 Y---------KCRDCGKSFSRSANLITHQRIHTGEK------------PFQCAECGKSFSRSPNL 352

  Fly   363 ----------KPFSCNICGGLFSRYSSLWSHKKLHSGEKNYKCSICGLAFAKAVYLKNHARIHTG 417
                      ||:||..||..|...|||.:|:.:|:|||.|:|..||.:|:....|..|.|||||
Human   353 IAHQRTHTGEKPYSCPECGKSFGNRSSLNTHQGIHTGEKPYECKECGESFSYNSNLIRHQRIHTG 417

  Fly   418 EKPYKCQTCGMQFSQSPHLKNHERTHSGERPYVCGVCDKGFARHATLWNHRRIHTGEKPYKCEIC 482
            ||||||..||.:||||..|..|.|||:||:||.|..|.|.|:|.:.|..|||.|..||||||.:|
Human   418 EKPYKCTDCGQRFSQSSALITHRRTHTGEKPYQCSECGKSFSRSSNLATHRRTHMVEKPYKCGVC 482

  Fly   483 GSAFSQAAHLKNHAKVHSGEKPYKCEICSAAFADRFALKRHRGIHQKYGQTAPRQTSSDG----- 542
            |.:|||::.|..|..:|:|||||:|..|..:|:....|.:|:.||.  |: .|.:.|..|     
Human   483 GKSFSQSSSLIAHQGMHTGEKPYECLTCGESFSWSSNLLKHQRIHT--GE-KPYKCSECGKCFSQ 544

  Fly   543 ---MIVHKQ 548
               ::||::
Human   545 RSQLVVHQR 553

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ClampNP_001014498.1 COG5048 <359..498 CDD:227381 73/149 (49%)
C2H2 Zn finger 367..387 CDD:275368 8/19 (42%)
C2H2 Zn finger 395..415 CDD:275368 7/19 (37%)
zf-H2C2_2 407..432 CDD:463886 16/24 (67%)
C2H2 Zn finger 423..443 CDD:275368 10/19 (53%)
C2H2 Zn finger 451..471 CDD:275368 9/19 (47%)
COG5048 475..>529 CDD:227381 25/53 (47%)
C2H2 Zn finger 479..499 CDD:275368 8/19 (42%)
C2H2 Zn finger 507..527 CDD:275368 5/19 (26%)
ZSCAN2XP_024305746.1 SCAN 70..157 CDD:128708
COG5048 251..631 CDD:227381 113/373 (30%)
C2H2 Zn finger 255..275 CDD:275368 4/19 (21%)
C2H2 Zn finger 283..303 CDD:275368 4/60 (7%)
C2H2 Zn finger 311..331 CDD:275368 4/19 (21%)
C2H2 Zn finger 339..359 CDD:275368 4/19 (21%)
C2H2 Zn finger 367..387 CDD:275368 8/19 (42%)
C2H2 Zn finger 395..415 CDD:275368 7/19 (37%)
C2H2 Zn finger 423..443 CDD:275368 10/19 (53%)
C2H2 Zn finger 451..471 CDD:275368 9/19 (47%)
C2H2 Zn finger 479..499 CDD:275368 8/19 (42%)
C2H2 Zn finger 507..527 CDD:275368 5/19 (26%)
C2H2 Zn finger 535..555 CDD:275368 4/19 (21%)
C2H2 Zn finger 563..583 CDD:275368
C2H2 Zn finger 591..611 CDD:275368
C2H2 Zn finger 619..639 CDD:275368
Blue background indicates that the domain is not in the aligned region.

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