Protein Alignment Clamp and CG4360

DIOPT Version :10

• Sequence 1: NP_001014498.1
• Gene: Clamp / 35445
• FlyBaseID: FBgn0032979
• Length: 566
• Species: Drosophila melanogaster
• Sequence 2: NP_650879.1
• Gene: CG4360 / 42413
• FlyBaseID: FBgn0038787
• Length: 556
• Species: Drosophila melanogaster
• Alignment Length: 640
• Identity: 137/640 - (21%)
• Similarity: 206/640 - (32%)
• Gaps: 259/640 - (40%)

  Fly    12 NAINGQPATIQYQTADGTILKQP----KIEGQKTEQQPTFYYTTNGNGGTVNLAQLATTDDNKTC 72
            |:...||.|:      .::.:.|    ::...:..|.||.....:.....|:|..::||..|
  Fly    50 NSGQQQPTTL------ASLQQSPFALHQLTAVQAIQHPTHQAMLHPQHPLVHLLDISTTTAN--- 105

  Fly    73 YIAQPVGGYNYALVNGMPLNQGAALGIATVDAQGRIQIVNQNKPIAANTISNISFKCDVCSDMFP 137
              :...||.::..::  |:.|    .:.:|.::..:.:.:..|          ..:|.||.:.|.
  Fly   106 --SGGGGGGSHTPIS--PMKQ----EVQSVISEEEVVVDDPRK----------KKQCHVCKNKFR 152

  Fly   138 HLALLNAHKRMHTDGEQQQQQQHNAQAGGDSIAVVSAQGLVQAQNIIGNGQMGQIQIVSSDTLEP 202
            .|..|..|.::|||
  Fly   153 QLTTLRNHMKIHTD--------------------------------------------------- 166

  Fly   203 VQQSVMQQQQHESKASKCINCGSSMLQQSK-------RKGPKQVRCESCMQAEQTAQQQ---QQL 257
                        .:..||.:|..:..|.|.       ..|.|...|..|  |:...||.   ..:
  Fly   167 ------------ERPYKCKHCDKAFRQISTLTNHVKIHTGEKPFTCNIC--AKDFRQQSTLINHI 217

  Fly   258 FVAQDGQMAHPVQIISTTPQAQAQLQQIVAAQTGGTTPKREASSGSGHHPVKKRNSQQMTKCQKC 322
            ...:..:.:.|..:::..||                       :|||.|    |.||.....|:
  Fly   218 KTHKAAESSTPTSLLNYQPQ-----------------------TGSGKH----RKSQMHQAYQQ- 254

  Fly   323 NGSGVVLVGQHSHASHSGVGGSVKQSVTVKTECLSCRNPSKPFSCNICGGLFSRYSSLWSHKKLH 387
                     ||.....|....|...|.....|.:      |||.|::|...|.:.|:|.:|::.|
  Fly   255 ---------QHQRVQISKTLYSGSYSSPAAEELV------KPFQCSVCKRRFPQLSTLHNHERTH 304

  Fly   388 SGEKNYKCSICGLAFAKAVYLKNHARIHTGEKPYKCQTCGMQFSQSPHLKNHERTH--------- 443
            ...|.|||..|..:|::...|.||.:||||:|||.|..|.|||.|...|.||.:||
  Fly   305 IDPKPYKCETCDKSFSQLATLANHKKIHTGDKPYTCSYCHMQFRQQSTLTNHLKTHTHQIAPGGV 369

  Fly   444 ----------------------------------------------------------------- 443
                                                                             
  Fly   370 GGAGGGGGAVTATVDHSMPAPLAPGTQQLTSGLLPNNLHGSTANIIQLDHHPLLHFLDGSTTVSS 434

  Fly   444 --------------------SG----------------ERPYVCGVCDKGFARHATLWNHRRIHT 472
                                ||                :||:.|.||.:.|::.:||.||.:.||
  Fly   435 VVATAAANTKVEHFQAGGSPSGRMTVVGTINMLKGDNPDRPFGCSVCQRFFSQQSTLVNHIKTHT 499

  Fly   473 GEKPYKCEICGSAFSQAAHLKNHAKVHSGEKPYKCEICSAAFADRFALKRHRGIH 527
            |||||||:||...|.|.|.|.||.|:|:|||||.|..|...|..:..|:.|..:|
  Fly   500 GEKPYKCKICEVNFRQVATLNNHMKIHTGEKPYNCSFCPKQFRQKSTLQNHLRVH 554

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Clamp	NP_001014498.1	COG5048	<359..498	CDD:227381	66/248 (27%)
		C2H2 Zn finger	367..387	CDD:275368	6/19 (32%)
		C2H2 Zn finger	395..415	CDD:275368	6/19 (32%)
		zf-H2C2_2	407..432	CDD:463886	15/24 (63%)
		C2H2 Zn finger	423..443	CDD:275368	9/19 (47%)
		C2H2 Zn finger	451..471	CDD:275368	8/19 (42%)
		COG5048	475..>529	CDD:227381	26/53 (49%)
		C2H2 Zn finger	479..499	CDD:275368	10/19 (53%)
		C2H2 Zn finger	507..527	CDD:275368	5/19 (26%)
CG4360	NP_650879.1	C2H2 Zn finger	144..164	CDD:275368	7/19 (37%)
		zf-H2C2_2	157..181	CDD:463886	8/86 (9%)
		C2H2 Zn finger	172..192	CDD:275368	4/19 (21%)
		C2H2 Zn finger	200..220	CDD:275368	5/21 (24%)
		zf-C2H2_8	281..366	CDD:464935	36/84 (43%)
		C2H2 Zn finger	284..304	CDD:275368	6/19 (32%)
		C2H2 Zn finger	312..332	CDD:275368	6/19 (32%)
		zf-H2C2_2	325..349	CDD:463886	15/23 (65%)
		C2H2 Zn finger	340..360	CDD:275368	9/19 (47%)
		C2H2 Zn finger	478..498	CDD:275368	8/19 (42%)
		C2H2 Zn finger	506..526	CDD:275368	10/19 (53%)
		zf-H2C2_2	519..543	CDD:463886	13/23 (57%)
		C2H2 Zn finger	534..554	CDD:275368	5/19 (26%)