DRSC/TRiP Functional Genomics Resources

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Protein Alignment Clamp and gl

DIOPT Version :10

Sequence 1:NP_001014498.1 Gene:Clamp / 35445 FlyBaseID:FBgn0032979 Length:566 Species:Drosophila melanogaster
Sequence 2:NP_001262708.1 Gene:gl / 42210 FlyBaseID:FBgn0004618 Length:679 Species:Drosophila melanogaster


Alignment Length:507 Identity:140/507 - (27%)
Similarity:204/507 - (40%) Gaps:125/507 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    51 TNGNGGTVNLAQLATT---------DDNKTCYIAQPVG-GYNYALVNGMPLNQGAALGIATVDAQ 105
            ::||.|..:..::|:|         |...:.:...|.| .||:|.  |.| :|.|:|...     
  Fly   132 SSGNHGYWSTDEMASTFPGLPPLDIDPLPSLFPFSPCGASYNFAA--GNP-HQAASLSYT----- 188

  Fly   106 GRIQIVNQNKPIAANTISNISFKCDVCSDMFPHLALLNA----HKRMHTDGEQQQQQQHNAQAGG 166
                                         :.||..|::.    |.:||:..:|.|.||...||..
  Fly   189 -----------------------------VHPHQMLISPNSHNHGQMHSQHQQHQHQQSQVQASH 224

  Fly   167 DSIAVVSAQGLVQAQNIIGNGQMGQIQIVSSDTLE---------PVQQSVMQQQQHESKASKCIN 222
            ...:::.:.|   ..||..||..|.:...:|...|         |...:.|.       .|..:|
  Fly   225 VGNSLLQSSG---GNNIGSNGSAGGVANAASCYYETSAGTAAPPPPPAAAMY-------PSMSVN 279

  Fly   223 CGSSM-LQQSKRKG-----PKQVRCESCMQAEQTAQQQQQLFVAQDGQMAHPVQII--------- 272
            ...:| :......|     |.|     |.|...|.........|    .|..|.::         
  Fly   280 VSMNMTMHHGYGAGDAGGVPMQ-----CSQMNWTPPSNSTSAAA----AAAAVNVLYPPLLSPGH 335

  Fly   273 ---STTPQAQAQLQQIVAAQTG-GTTP-----KREA------SSGSGHHPVKKRNSQQMTKCQKC 322
               |.|....|..:  ..|.|| |..|     ::|:      ||.:|::|....| |..|...|.
  Fly   336 YPASATYSFTADFR--APAPTGLGALPPLTVGEKESPSPPANSSLAGYYPTGVGN-QGYTPPHKS 397

  Fly   323 NGSGVVLVGQHSHASHSGVGGSVKQSVTVKTECL-----SCRNPSKPFSCNICGGLFSRYSSLWS 382
            ..|        ..|:..|:..|..:......|.|     |.....||..|.:||..::|.|:|.:
  Fly   398 PTS--------YQAAALGLSLSAFEDEEDSNEDLDGDEGSSGGEMKPNLCRLCGKTYARPSTLKT 454

  Fly   383 HKKLHSGEKNYKCSICGLAFAKAVYLKNHARIHTGEKPYKCQTCGMQFSQSPHLKNHERTHSGER 447
            |.:.||||:.|:|..|..:|::|..|..|.|.|||:||::|..|..:||||..:..|.|||||||
  Fly   455 HLRTHSGERPYRCPDCNKSFSQAANLTAHVRTHTGQKPFRCPICDRRFSQSSSVTTHMRTHSGER 519

  Fly   448 PYVCGVCDKGFARHATLWNHRRIHTGEKPYKCEICGSAFSQAAHLKNHAKVH 499
            ||.|..|.|.|:..:||..|.|||:|||||:|::|...|||:.:|..|.:||
  Fly   520 PYRCSSCKKSFSDSSTLTKHLRIHSGEKPYQCKLCLLRFSQSGNLNRHMRVH 571

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ClampNP_001014498.1 COG5048 <359..498 CDD:227381 64/138 (46%)
C2H2 Zn finger 367..387 CDD:275368 7/19 (37%)
C2H2 Zn finger 395..415 CDD:275368 7/19 (37%)
zf-H2C2_2 407..432 CDD:463886 11/24 (46%)
C2H2 Zn finger 423..443 CDD:275368 8/19 (42%)
C2H2 Zn finger 451..471 CDD:275368 8/19 (42%)
COG5048 475..>529 CDD:227381 12/25 (48%)
C2H2 Zn finger 479..499 CDD:275368 7/19 (37%)
C2H2 Zn finger 507..527 CDD:275368
glNP_001262708.1 COG5048 <426..571 CDD:227381 65/144 (45%)
C2H2 Zn finger 439..459 CDD:275368 7/19 (37%)
C2H2 Zn finger 467..487 CDD:275368 7/19 (37%)
C2H2 Zn finger 495..515 CDD:275368 8/19 (42%)
C2H2 Zn finger 523..543 CDD:275368 8/19 (42%)
C2H2 Zn finger 551..571 CDD:275368 7/19 (37%)
Blue background indicates that the domain is not in the aligned region.

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