DRSC/TRiP Functional Genomics Resources

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Protein Alignment Clamp and M1BP

DIOPT Version :10

Sequence 1:NP_001014498.1 Gene:Clamp / 35445 FlyBaseID:FBgn0032979 Length:566 Species:Drosophila melanogaster
Sequence 2:NP_649825.1 Gene:M1BP / 41042 FlyBaseID:FBgn0037621 Length:418 Species:Drosophila melanogaster


Alignment Length:251 Identity:67/251 - (26%)
Similarity:106/251 - (42%) Gaps:61/251 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly   328 VLVGQHSHASHSGVGGSVKQSVTVKTECLSCRNPSKP---------------FSCNICGGLFSRY 377
            ||..::.|           :::.||    .|..|.||               :.|..||......
  Fly   214 VLDDEYEH-----------ENIVVK----KCSLPPKPKVRSDDARRRGTGGVYICEQCGNHIKGR 263

  Fly   378 SSLWSHKKLHSGEKNYKCSICGLAFAKAVYLKNHARIHTGEKPYKCQTCGMQFSQSPHLKNHERT 442
            .:...|.:.|.|:|.:.|.:|...|.....||.|.|.||||:|:.|:.||..|:.......||||
  Fly   264 MAFELHCRRHRGDKQFGCELCQSRFCTTSELKRHMRKHTGERPFACKYCGRCFTDYTTRVKHERT 328

  Fly   443 HSGERPYVCGVCDKGFARHATLWNHRRIHTGEKPYKCEICGSAFSQAAHLKNHAKVHSGEKPYKC 507
            |:.|||||||.|.|.|.....|.||..||:||:.|:||:|..:|....||..|.:          
  Fly   329 HTNERPYVCGTCGKAFTTGYILKNHMLIHSGERAYRCELCDKSFMLPTHLSTHFR---------- 383

  Fly   508 EICSAAFADRFALKRHRGIHQKYGQTAPRQTSSDGMIVHKQEIPDMEDEAQQEVII 563
                            .|:|:::.:.|..:     .::.:::..::::|.:..:.|
  Fly   384 ----------------SGVHKRHLEKAEMK-----QVLEQEQKRELKEEEEDSLHI 418

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ClampNP_001014498.1 COG5048 <359..498 CDD:227381 56/153 (37%)
C2H2 Zn finger 367..387 CDD:275368 4/19 (21%)
C2H2 Zn finger 395..415 CDD:275368 7/19 (37%)
zf-H2C2_2 407..432 CDD:463886 13/24 (54%)
C2H2 Zn finger 423..443 CDD:275368 7/19 (37%)
C2H2 Zn finger 451..471 CDD:275368 8/19 (42%)
COG5048 475..>529 CDD:227381 10/53 (19%)
C2H2 Zn finger 479..499 CDD:275368 7/19 (37%)
C2H2 Zn finger 507..527 CDD:275368 1/19 (5%)
M1BPNP_649825.1 zf-AD 13..84 CDD:214871
C2H2 Zn finger 253..273 CDD:275368 4/19 (21%)
COG5048 276..>331 CDD:227381 22/54 (41%)
C2H2 Zn finger 281..301 CDD:275368 7/19 (37%)
zf-H2C2_2 293..317 CDD:463886 12/23 (52%)
C2H2 Zn finger 309..329 CDD:275368 7/19 (37%)
zf-H2C2_2 324..346 CDD:463886 15/21 (71%)
C2H2 Zn finger 337..357 CDD:275368 8/19 (42%)
zf-H2C2_2 350..372 CDD:463886 11/21 (52%)
C2H2 Zn finger 365..383 CDD:275368 7/17 (41%)
Blue background indicates that the domain is not in the aligned region.

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