DRSC/TRiP Functional Genomics Resources

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Protein Alignment Clamp and ranshi

DIOPT Version :10

Sequence 1:NP_001014498.1 Gene:Clamp / 35445 FlyBaseID:FBgn0032979 Length:566 Species:Drosophila melanogaster
Sequence 2:NP_649824.1 Gene:ranshi / 41041 FlyBaseID:FBgn0037620 Length:346 Species:Drosophila melanogaster


Alignment Length:279 Identity:84/279 - (30%)
Similarity:128/279 - (45%) Gaps:31/279 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly   241 CESCMQ-----AEQTAQQQQQLFVAQDGQMAHPVQIISTTPQA---QAQLQQIVAAQTGGTTPKR 297
            |::|:|     .|:..:.|::|..:||.:  ..::|...:|::   |.:|:..:|..:.......
  Fly    55 CQTCLQQAISFRERCLEVQRELLHSQDDE--DFLRICQESPKSVLEQEELELDLAEISIEVERLD 117

  Fly   298 EASSG----SGHHPVKKRNSQQMTKCQKCNGSGVVLVGQHSHASH----SGVGGSVKQSVTVKTE 354
            :.:.|    ||.......|..::.:.:..|...:    .:|...:    |......||.:...:|
  Fly   118 DLNEGPIQSSGFKVEDILNESKINEDEPNNEDDI----DYSEMDYLIYESDTEVDAKQELKSDSE 178

  Fly   355 ----CLSCRNP---SKPFSCNICGGLFSRYSSLWSHKKLHSGEKNYKCSICGLAFAKAVYLKNHA 412
                ..:.|||   ::.|.|..||.......|...|.|.|.|.|.:.|..|...|.....||.|.
  Fly   179 NPKKRRNRRNPRDSNRTFFCEECGNHIKDRISFILHCKRHRGVKEFGCEFCEDRFCTPAELKRHI 243

  Fly   413 RIHTGEKPYKCQTCGMQFSQ-SPHLKNHERTHSGERPYVCGVCDKGFARHATLWNHRRIHTGEKP 476
            |.||||||:||:.|...||. |..|| |||||:.|||:||..|:..|.....|.||..:|||||.
  Fly   244 RKHTGEKPFKCRHCSRSFSDYSTRLK-HERTHTNERPFVCKECNNAFTTSYILKNHMLVHTGEKA 307

  Fly   477 YKCEICGSAFSQAAHLKNH 495
            ::|::|...||:..||..|
  Fly   308 FRCDLCDKLFSRYTHLTTH 326

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ClampNP_001014498.1 COG5048 <359..498 CDD:227381 61/141 (43%)
C2H2 Zn finger 367..387 CDD:275368 6/19 (32%)
C2H2 Zn finger 395..415 CDD:275368 7/19 (37%)
zf-H2C2_2 407..432 CDD:463886 14/24 (58%)
C2H2 Zn finger 423..443 CDD:275368 10/20 (50%)
C2H2 Zn finger 451..471 CDD:275368 6/19 (32%)
COG5048 475..>529 CDD:227381 8/21 (38%)
C2H2 Zn finger 479..499 CDD:275368 7/17 (41%)
C2H2 Zn finger 507..527 CDD:275368
ranshiNP_649824.1 zf-AD 5..76 CDD:462262 5/20 (25%)
C2H2 Zn finger 198..218 CDD:275368 6/19 (32%)
COG5048 222..>276 CDD:227381 27/54 (50%)
C2H2 Zn finger 226..246 CDD:275368 7/19 (37%)
zf-H2C2_2 238..262 CDD:463886 13/23 (57%)
C2H2 Zn finger 254..274 CDD:275368 10/20 (50%)
C2H2 Zn finger 282..302 CDD:275368 6/19 (32%)
zf-H2C2_2 295..319 CDD:463886 11/23 (48%)
C2H2 Zn finger 310..328 CDD:275368 7/17 (41%)
Blue background indicates that the domain is not in the aligned region.

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