DRSC/TRiP Functional Genomics Resources

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Protein Alignment Clamp and fezf-1

DIOPT Version :9

Sequence 1:NP_001014498.1 Gene:Clamp / 35445 FlyBaseID:FBgn0032979 Length:566 Species:Drosophila melanogaster
Sequence 2:NP_502594.2 Gene:fezf-1 / 3564888 WormBaseID:WBGene00012639 Length:218 Species:Caenorhabditis elegans


Alignment Length:210 Identity:78/210 - (37%)
Similarity:106/210 - (50%) Gaps:18/210 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly   322 CNGSGVV---LVGQHSHASHSGVGGSVKQSVTVKTECLSCRNPSKPFSCNICGGLFSRYSSLWSH 383
            |..||:.   |...:|..:.|..|..              .|..|.|.|.|||..|:.:.:|..|
 Worm    20 CRSSGIFPFPLPSSNSIFAESSSGDD--------------ENSRKKFPCEICGKQFNAHYNLTRH 70

  Fly   384 KKLHSGEKNYKCSICGLAFAKAVYLKNHARIHTGEKPYKCQTCGMQFSQSPHLKNHERTHSGERP 448
            ..:|:||:.:.|.:||.||.:|..|..|..|||..||:||:|||..|::|..|..|.|.|.|.:|
 Worm    71 MPVHTGERPFVCKVCGKAFRQASTLCRHKIIHTDSKPHKCKTCGKCFNRSSTLNTHVRIHQGFKP 135

  Fly   449 YVCGVCDKGFARHATLWNHRRIHTGEKPYKCEICGSAFSQAAHLKNHAKVHSGEKPYKCEICSAA 513
            :||.:|.|||.::....|||..|...|.:.|.||..||.|:.:|..|...|...||:.|.:||..
 Worm   136 FVCEICGKGFHQNGNYKNHRLTHEDTKKFSCSICSRAFHQSYNLAFHMFTHEEHKPFTCHVCSKG 200

  Fly   514 FADRFALKRH-RGIH 527
            |...|.||:| |.:|
 Worm   201 FCRNFDLKKHLRKMH 215

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ClampNP_001014498.1 COG5048 <359..498 CDD:227381 58/138 (42%)
C2H2 Zn finger 367..387 CDD:275368 7/19 (37%)
zf-H2C2_2 379..403 CDD:290200 9/23 (39%)
C2H2 Zn finger 395..415 CDD:275368 8/19 (42%)
zf-H2C2_2 407..432 CDD:290200 13/24 (54%)
C2H2 Zn finger 423..443 CDD:275368 9/19 (47%)
zf-H2C2_2 435..460 CDD:290200 12/24 (50%)
C2H2 Zn finger 451..471 CDD:275368 8/19 (42%)
zf-H2C2_2 464..488 CDD:290200 10/23 (43%)
COG5048 475..>529 CDD:227381 22/54 (41%)
C2H2 Zn finger 479..499 CDD:275368 8/19 (42%)
zf-H2C2_2 491..515 CDD:290200 8/23 (35%)
C2H2 Zn finger 507..527 CDD:275368 9/20 (45%)
fezf-1NP_502594.2 COG5048 <13..212 CDD:227381 76/205 (37%)
DUF3449 <50..>70 CDD:288759 8/19 (42%)
C2H2 Zn finger 54..74 CDD:275368 7/19 (37%)
zf-H2C2_2 66..91 CDD:290200 10/24 (42%)
C2H2 Zn finger 82..102 CDD:275368 8/19 (42%)
C2H2 Zn finger 110..130 CDD:275368 9/19 (47%)
C2H2 Zn finger 138..158 CDD:275368 8/19 (42%)
C2H2 Zn finger 166..186 CDD:275368 8/19 (42%)
C2H2 Zn finger 194..212 CDD:275368 8/17 (47%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
00.000

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