DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Clamp and CG1529

DIOPT Version :10

Sequence 1:NP_001014498.1 Gene:Clamp / 35445 FlyBaseID:FBgn0032979 Length:566 Species:Drosophila melanogaster
Sequence 2:NP_001138223.2 Gene:CG1529 / 33077 FlyBaseID:FBgn0031144 Length:512 Species:Drosophila melanogaster


Alignment Length:449 Identity:97/449 - (21%)
Similarity:148/449 - (32%) Gaps:157/449 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly   146 KRMHTDGEQQQQQQHNAQAGGDSIAVVSAQGLVQAQNIIGNGQMGQIQIVS--SDTLEPVQQSVM 208
            |..|.:.|.:.:::|..||.|..:.             :...|..|.:|:.  .|...|.:....
  Fly   102 KENHEENEHELEEEHEKQADGQQVD-------------LSKKQEDQKKILDDREDEEYPDEYENS 153

  Fly   209 QQQQHESKASK------CINCGSSMLQ--------QSKRKG-PKQVRCESCMQAEQTAQQQQQLF 258
            |||..:...||      |..||..:.:        :|..:| .|...|.||   :::..:.:|| 
  Fly   154 QQQLSQGTGSKRRAGLACDQCGKQVYKLPYLEAHIRSVHQGYSKPFLCRSC---DKSFTRYEQL- 214

  Fly   259 VAQDGQMAHPVQIISTTPQAQAQLQQIVAAQTGGTTPKREASSGSGHHPVKKRNSQQMTKCQKCN 323
             ....:.|||     ...|.|.:|:.::                                     
  Fly   215 -RSHMRNAHP-----QLEQLQQELRDLI------------------------------------- 236

  Fly   324 GSGVVLVGQHSHASHSGVGGSVKQSVTVKTECLSCRNPSKPFSCNICGGLFSRYSSLWSHKKLHS 388
                                                       |.:|...:|..::|..|.|.|:
  Fly   237 -------------------------------------------CELCNRQYSTKNALGEHLKRHA 258

  Fly   389 GEKNYKCSICGLAFAKAVYLKNHARIH--TGEKPYKCQTCGMQFSQSPHLKNHER-THSGERPYV 450
            ..|.:.|..||:|......|..|.|.|  |.|: :||:.|...|.....:..|.| .|.|:|.:.
  Fly   259 QRKEHVCEHCGVAKVTRTELLTHLRTHNPTWER-FKCEQCPQLFRHKSAISRHVRVVHEGQRRFQ 322

  Fly   451 CGVCDKGFARHATLWNHRRIHTGEKPYKCEICGSAFSQAAHLKNHAKVHSGEKPYKCEICSAAFA 515
            ||.|:|.|..||:...|.|:||       |..||  .:||.          |.|:.|..|.....
  Fly   323 CGHCEKKFGTHASQVRHERLHT-------ESTGS--GEAAE----------EWPFACIHCQKPCV 368

  Fly   516 DR----FALKRHRG--IHQKYGQTAPRQTSSDGMIVHKQEIPDMED---EAQQEVIIGG 565
            .|    ..|:|||.  .|:|     .|:.|.:.....::...|.|.   ||||:.:..|
  Fly   369 SRQTLELHLRRHRARKTHRK-----RREHSRESQEQEQEHDRDQEQGAREAQQDQLRKG 422

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ClampNP_001014498.1 COG5048 <359..498 CDD:227381 43/141 (30%)
C2H2 Zn finger 367..387 CDD:275368 6/19 (32%)
C2H2 Zn finger 395..415 CDD:275368 7/19 (37%)
zf-H2C2_2 407..432 CDD:463886 10/26 (38%)
C2H2 Zn finger 423..443 CDD:275368 5/20 (25%)
C2H2 Zn finger 451..471 CDD:275368 9/19 (47%)
COG5048 475..>529 CDD:227381 15/59 (25%)
C2H2 Zn finger 479..499 CDD:275368 5/19 (26%)
C2H2 Zn finger 507..527 CDD:275368 7/25 (28%)
CG1529NP_001138223.2 zf-AD 11..79 CDD:462262
C2H2 Zn finger 171..192 CDD:275368 4/20 (20%)
C2H2 Zn finger 201..222 CDD:275368 5/25 (20%)
C2H2 Zn finger 237..257 CDD:275368 6/19 (32%)
C2H2 Zn finger 265..285 CDD:275368 7/19 (37%)
C2H2 Zn finger 294..315 CDD:275368 5/20 (25%)
C2H2 Zn finger 323..343 CDD:275368 9/19 (47%)
C2H2 Zn finger 360..380 CDD:275368 4/19 (21%)
tolA 391..>495 CDD:236545 8/32 (25%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.