DRSC/TRiP Functional Genomics Resources

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Protein Alignment Clamp and Zfp954

DIOPT Version :9

Sequence 1:NP_001014498.1 Gene:Clamp / 35445 FlyBaseID:FBgn0032979 Length:566 Species:Drosophila melanogaster
Sequence 2:NP_001100942.1 Gene:Zfp954 / 308320 RGDID:1561308 Length:415 Species:Rattus norvegicus


Alignment Length:436 Identity:115/436 - (26%)
Similarity:171/436 - (39%) Gaps:85/436 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly   152 GEQQQQQQHNAQAGGDSIAVVSAQG------------LVQAQNIIGNGQMGQI-QIVSSDTLEPV 203
            |...|..|::.:........||.:.            |..:|.::....|.:| .:|||..||  
  Rat    22 GALPQVSQYSVKPANQEEGCVSFEDVAVYFSWEEWTLLDDSQRLLYQTVMTEIFTLVSSLRLE-- 84

  Fly   204 QQSVMQQQQHESKASKCINCGSSMLQQSKRKGP-------KQVRCESCMQAEQTAQ--------Q 253
            ...:....|.||       ||...:...:...|       .:|..||.::...:|:        |
  Rat    85 LSGIQDLTQAES-------CGDLSVPALRFLTPCLWTGCWIKVESESPIEQSLSAEGGVSLSTLQ 142

  Fly   254 QQQLFVAQDGQMAHPVQIISTTPQAQAQLQQIVAAQTGGTTPKREASSGSGHHPVKK------RN 312
            ||.|..|:       ..::||        ..:...||..:..:.:.:|.....|...      :|
  Rat   143 QQMLCCAE-------TPLLST--------DNVTILQTSSSLLRHQVTSSGRDAPTNTESGEAIQN 192

  Fly   313 SQQMTKCQKCNGSGVVLVGQHSHASHSGVGGSVKQSVTVKTECLSCRNPSKPFSCNICGGLFSRY 377
            .::..||..|                    |.:..|::............|||.|:.||..||:.
  Rat   193 EKKNCKCTYC--------------------GKIFTSISHLNRHWKIHTGEKPFQCSECGKSFSQK 237

  Fly   378 SSLWSHKKLHSGEKNYKCSICGLAFAKAVYLKNHARIHTGEKPYKCQTCGMQFSQSPHLKNHERT 442
            :.|..|.::|:|||.|:|..||.||...:.|.:|..:||||.|:||..||..:.....||.|.|.
  Rat   238 AFLIKHFRMHTGEKPYRCGECGKAFKHNISLISHQGLHTGEMPFKCTECGKSYRSREGLKVHYRF 302

  Fly   443 HSGERPYVCGVCDKGFARHATLWNHRRIHTGEKPYKCEICGSAFSQAAHLKNHAKVHSGEKPYKC 507
            |:||.|:.|..|.|.:.....|.||...||.|||:.|..||..|:|.:.|..|..||.  ||:||
  Rat   303 HTGEMPFECSECGKSYRSREGLLNHFYSHTAEKPFSCGECGMYFTQNSELIEHLTVHG--KPFKC 365

  Fly   508 EICSAAFADRFALKRHRGIHQKYGQTAPRQ-----TSSDGMIVHKQ 548
            ..|...|...:...||..:|....|.|.|:     .||..:..|::
  Rat   366 NECGRVFNSSYNFVRHMKVHVVAKQYACRECDKVYCSSSSLYKHRK 411

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ClampNP_001014498.1 COG5048 <359..498 CDD:227381 57/138 (41%)
C2H2 Zn finger 367..387 CDD:275368 7/19 (37%)
zf-H2C2_2 379..403 CDD:290200 11/23 (48%)
C2H2 Zn finger 395..415 CDD:275368 7/19 (37%)
zf-H2C2_2 407..432 CDD:290200 11/24 (46%)
C2H2 Zn finger 423..443 CDD:275368 7/19 (37%)
zf-H2C2_2 435..460 CDD:290200 11/24 (46%)
C2H2 Zn finger 451..471 CDD:275368 6/19 (32%)
zf-H2C2_2 464..488 CDD:290200 12/23 (52%)
COG5048 475..>529 CDD:227381 20/53 (38%)
C2H2 Zn finger 479..499 CDD:275368 7/19 (37%)
zf-H2C2_2 491..515 CDD:290200 9/23 (39%)
C2H2 Zn finger 507..527 CDD:275368 5/19 (26%)
Zfp954NP_001100942.1 KRAB 42..95 CDD:214630 12/54 (22%)
KRAB 42..81 CDD:279668 8/38 (21%)
zf-C2H2 197..219 CDD:278523 5/41 (12%)
C2H2 Zn finger 199..219 CDD:275368 4/39 (10%)
zf-H2C2_2 211..236 CDD:290200 7/24 (29%)
C2H2 Zn finger 227..247 CDD:275368 7/19 (37%)
zf-H2C2_2 240..264 CDD:290200 12/23 (52%)
C2H2 Zn finger 255..275 CDD:275368 7/19 (37%)
C2H2 Zn finger 283..303 CDD:275368 7/19 (37%)
zf-H2C2_2 296..320 CDD:290200 11/23 (48%)
C2H2 Zn finger 311..331 CDD:275368 6/19 (32%)
zf-C2H2_8 336..409 CDD:292531 24/74 (32%)
C2H2 Zn finger 339..359 CDD:275368 7/19 (37%)
zf-C2H2 363..385 CDD:278523 6/21 (29%)
C2H2 Zn finger 365..385 CDD:275368 5/19 (26%)
C2H2 Zn finger 393..413 CDD:275368 4/19 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
00.000

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