DRSC/TRiP Functional Genomics Resources

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Protein Alignment Clamp and Ikzf2

DIOPT Version :9

Sequence 1:NP_001014498.1 Gene:Clamp / 35445 FlyBaseID:FBgn0032979 Length:566 Species:Drosophila melanogaster
Sequence 2:XP_017451858.1 Gene:Ikzf2 / 301476 RGDID:1308686 Length:541 Species:Rattus norvegicus


Alignment Length:242 Identity:71/242 - (29%)
Similarity:101/242 - (41%) Gaps:35/242 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly   331 GQHSHASHSGVGGSVKQSVTVKTECLSCRNPSKPFSCNICGGLFSRYSSLWSHKK--------LH 387
            |||:...|.....|||..:....||  .|.|            .||...:..|.:        :.
  Rat    51 GQHASPGHMTSTNSVKLEMQSDEEC--DRQP------------LSREDEIRGHDEGSSLEDPLIE 101

  Fly   388 SGEKNYKCSICGLAFAKAVY-LKNHARIHTGEKPYKCQTCGMQFSQSPHLKNHERTHSGERPYVC 451
            |||         :|..:.|. |:....|.......||..|||.......|..|:|:|:||||:.|
  Rat   102 SGE---------VADNRKVQDLQGEGGIRLPNGKLKCDVCGMVCIGPNVLMVHKRSHTGERPFHC 157

  Fly   452 GVCDKGFARHATLWNHRRIHTGEKPYKCEICGSAFSQAAHLKNHAKVHSGEKPYKCEICSAAFAD 516
            ..|...|.:...|..|.::|:||||:||..|..|..:...|..|.:.||..||:||..|..::..
  Rat   158 NQCGASFTQKGNLLRHIKLHSGEKPFKCPFCSYACRRRDALTGHLRTHSVGKPHKCNYCGRSYKQ 222

  Fly   517 RFALKRHRGIHQKYGQTAPRQTSSDGMIVHKQEIPDMEDEAQQEVII 563
            |.:|:.|:.....|.|....:.:...|..|   :|.|||..:||.|:
  Rat   223 RSSLEEHKERCHNYLQNVSMEAAGQVMSHH---VPPMEDCKEQEPIM 266

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ClampNP_001014498.1 COG5048 <359..498 CDD:227381 41/147 (28%)
C2H2 Zn finger 367..387 CDD:275368 3/27 (11%)
zf-H2C2_2 379..403 CDD:290200 5/31 (16%)
C2H2 Zn finger 395..415 CDD:275368 3/20 (15%)
zf-H2C2_2 407..432 CDD:290200 7/25 (28%)
C2H2 Zn finger 423..443 CDD:275368 7/19 (37%)
zf-H2C2_2 435..460 CDD:290200 11/24 (46%)
C2H2 Zn finger 451..471 CDD:275368 5/19 (26%)
zf-H2C2_2 464..488 CDD:290200 11/23 (48%)
COG5048 475..>529 CDD:227381 18/53 (34%)
C2H2 Zn finger 479..499 CDD:275368 5/19 (26%)
zf-H2C2_2 491..515 CDD:290200 9/23 (39%)
C2H2 Zn finger 507..527 CDD:275368 5/19 (26%)
Ikzf2XP_017451858.1 C2H2 Zn finger 129..149 CDD:275368 7/19 (37%)
zf-H2C2_2 142..166 CDD:404364 11/23 (48%)
C2H2 Zn finger 157..177 CDD:275368 5/19 (26%)
zf-H2C2_2 169..194 CDD:404364 11/24 (46%)
C2H2 Zn finger 185..205 CDD:275368 5/19 (26%)
C2H2 Zn finger 213..234 CDD:275368 5/20 (25%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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