DRSC/TRiP Functional Genomics Resources

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Protein Alignment Clamp and Zfp641

DIOPT Version :10

Sequence 1:NP_001014498.1 Gene:Clamp / 35445 FlyBaseID:FBgn0032979 Length:566 Species:Drosophila melanogaster
Sequence 2:NP_001100262.1 Gene:Zfp641 / 300197 RGDID:1310412 Length:421 Species:Rattus norvegicus


Alignment Length:163 Identity:57/163 - (34%)
Similarity:76/163 - (46%) Gaps:21/163 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly   363 KPFSCNICGGLFSRYSSLWSHKKLHSGEKNYKCSICGLAFAKAVYLKNHARIHTGEKPYKCQTCG 427
            ||.:|..||..|...|.|..|::.|:||:.|.|..|..:|.:..:|..|.:.|..:||.:|..||
  Rat   248 KPHTCPQCGKQFVWGSHLARHQQTHTGERPYSCLKCEKSFGRRHHLIRHQKTHLHDKPSRCPECG 312

  Fly   428 MQFSQSPHLKNHERTHS----------GERP-----------YVCGVCDKGFARHATLWNHRRIH 471
            ..|..|.||.:|:|.|:          ||.|           :||..|.|.|.|...|..|...|
  Rat   313 KTFRCSSHLASHQRVHADSKSCKGQEIGESPGAQCAPPVPKCHVCTECGKSFGRRHHLVRHWLTH 377

  Fly   472 TGEKPYKCEICGSAFSQAAHLKNHAKVHSGEKP 504
            |||||:.|..|..:|.:..||..|...|.|:.|
  Rat   378 TGEKPFHCPRCEKSFGRKHHLDRHLLTHQGQSP 410

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ClampNP_001014498.1 COG5048 <359..498 CDD:227381 54/155 (35%)
C2H2 Zn finger 367..387 CDD:275368 7/19 (37%)
C2H2 Zn finger 395..415 CDD:275368 5/19 (26%)
zf-H2C2_2 407..432 CDD:463886 9/24 (38%)
C2H2 Zn finger 423..443 CDD:275368 9/19 (47%)
C2H2 Zn finger 451..471 CDD:275368 7/19 (37%)
COG5048 475..>529 CDD:227381 11/30 (37%)
C2H2 Zn finger 479..499 CDD:275368 6/19 (32%)
C2H2 Zn finger 507..527 CDD:275368
Zfp641NP_001100262.1 PLN03206 <13..90 CDD:178745
KRAB 95..156 CDD:214630
COG5048 <208..402 CDD:227381 53/153 (35%)
C2H2 Zn finger 252..272 CDD:275368 7/19 (37%)
C2H2 Zn finger 280..300 CDD:275368 5/19 (26%)
C2H2 Zn finger 308..328 CDD:275368 9/19 (47%)
C2H2 Zn finger 357..377 CDD:275368 7/19 (37%)
C2H2 Zn finger 385..405 CDD:275368 6/19 (32%)
Blue background indicates that the domain is not in the aligned region.

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