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Protein Alignment Clamp and Zfp354a

DIOPT Version :9

Sequence 1:	NP_001014498.1	Gene:	Clamp / 35445	FlyBaseID:	FBgn0032979	Length:	566	Species:	Drosophila melanogaster
Sequence 2:	NP_434685.1	Gene:	Zfp354a / 24522	RGDID:	2967	Length:	576	Species:	Rattus norvegicus

Alignment Length:	425	Identity:	117/425 - (27%)
Similarity:	195/425 - (45%)	Gaps:	65/425 - (15%)

- Green bases have known domain annotations that are detailed below.

  Fly   127 FKCDVCSDMFPHLALLNAHKRMHTDGEQQQQQQHNAQAGGDSIAVVSAQGLVQAQNIIGNGQMGQ 191
            :||.:|...|.:.:.|..|::.|: ||:..:.:..::|...|.|::..|.....:......:.|:
  Rat   188 YKCSMCEKTFINTSSLRKHEKNHS-GEKLFKCKECSKAFSQSSALIQHQITHTGEKPYVCKECGK 251

  Fly   192 IQIVSSDTLEPVQQSVMQQQQHESKASKCINCGSSMLQQS---------KRKGPKQV----RCES 243
            ...:|:...:.::...::      |:.:|..||.|..|:|         .|:.|.:.    :..:
  Rat   252 AFTLSTSLYKHLRTHTVE------KSYRCKECGKSFGQRSGLFIHQKIHARENPHRYNPGRKASA 310

  Fly   244 CMQAEQTAQQQQQLFVAQDGQMAHPVQIISTTPQAQAQLQQIVAAQTGGTTPKREASSGSG---- 304
            .:...|.|..:::.::..:         ...|.::.:.|:......| |..|.|.:..|..
  Rat   311 SLSGCQRAHSRKKTYLCNE---------CGNTFKSSSSLRYHQRIHT-GEKPFRCSECGRAFSQS 365

  Fly   305 -----HHPVKKRNSQQMTKCQKCNGSGVVLVGQ--HSHASHSGVGGSVKQSVTVKTECLSCRNPS 362
                 |..:  ...::..:|.:| |.|...:.:  .....|:|                     .
  Rat   366 ASLIQHERI--HTGEKPYRCGEC-GKGFTSISRLNRHRIIHTG---------------------E 406

  Fly   363 KPFSCNICGGLFSRYSSLWSHKKLHSGEKNYKCSICGLAFAKAVYLKNHARIHTGEKPYKCQTCG 427
            |.::||.||...|.:|:|..|:::|:|||..||.:||.||.::..|..|.|:||||:||||..||
  Rat   407 KLYNCNECGKALSSHSTLIIHERIHTGEKPCKCKVCGKAFRQSSALIQHQRMHTGERPYKCNECG 471

  Fly   428 MQFSQSPHLKNHERTHSGERPYVCGVCDKGFARHATLWNHRRIHTGEKPYKCEICGSAFSQAAHL 492
            ..|..:..|.||:|.|:||:||.|..|...|.:.:.|..||||||||||:||..||..|.|::..
  Rat   472 KTFRCNSSLSNHQRIHTGEKPYQCIECGMSFGQSSALIQHRRIHTGEKPFKCNTCGKTFRQSSSR 536

  Fly   493 KNHAKVHSGEKPYKCEICSAAFADRFALKRHRGIH 527
            ..|.::|:|||||:|..|...|..|.:|..|..||
  Rat   537 IAHQRIHTGEKPYECNTCGKLFNYRSSLTNHYKIH 571

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.