DRSC/TRiP Functional Genomics Resources

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Protein Alignment Clamp and Ikzf1

DIOPT Version :9

Sequence 1:NP_001014498.1 Gene:Clamp / 35445 FlyBaseID:FBgn0032979 Length:566 Species:Drosophila melanogaster
Sequence 2:XP_011242004.1 Gene:Ikzf1 / 22778 MGIID:1342540 Length:559 Species:Mus musculus


Alignment Length:251 Identity:68/251 - (27%)
Similarity:104/251 - (41%) Gaps:54/251 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly   262 DGQMAHPV-QIISTTPQAQAQLQQ---IVAAQTGG------TTPKREASSGSGHHPVKKRNSQQM 316
            :|....|| :.:|||..||...:.   :||....|      ..||   |....:..|:.::.::.
Mouse    50 EGDEPMPVPEDLSTTSGAQQNSKSDRGMVAYGADGFRDFHAIIPK---SFSPSNVKVETQSDEEN 111

  Fly   317 TKCQKCNGSGVV-------LVGQHSHASHSGVGGSVKQSVTVKTECLSCRNPSKPFSCNICGGLF 374
            .:..:.||....       ..|:..:.||...|.|....|                     ||: 
Mouse   112 GRACEMNGEECAEDLRMLDASGEKMNGSHRDQGSSALSGV---------------------GGI- 154

  Fly   375 SRYSSLWSHKKLHSGEKNYKCSICGLAFAKAVYLKNHARIHTGEKPYKCQTCGMQFSQSPHLKNH 439
                      :|.:|:  .||.|||:.......|..|.|.||||:|::|..||..|:|..:|..|
Mouse   155 ----------RLPNGK--LKCDICGIVCIGPNVLMVHKRSHTGERPFQCNQCGASFTQKGNLLRH 207

  Fly   440 ERTHSGERPYVCGVCDKGFARHATLWNHRRIHTGEKPYKCEICGSAFSQAAHLKNH 495
            .:.||||:|:.|.:|:....|...|..|.|.|:..||:||..||.::.|.:.|:.|
Mouse   208 IKLHSGEKPFKCHLCNYACRRRDALTGHLRTHSVGKPHKCGYCGRSYKQRSSLEEH 263

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ClampNP_001014498.1 COG5048 <359..498 CDD:227381 45/137 (33%)
C2H2 Zn finger 367..387 CDD:275368 2/19 (11%)
zf-H2C2_2 379..403 CDD:290200 7/23 (30%)
C2H2 Zn finger 395..415 CDD:275368 7/19 (37%)
zf-H2C2_2 407..432 CDD:290200 12/24 (50%)
C2H2 Zn finger 423..443 CDD:275368 7/19 (37%)
zf-H2C2_2 435..460 CDD:290200 9/24 (38%)
C2H2 Zn finger 451..471 CDD:275368 6/19 (32%)
zf-H2C2_2 464..488 CDD:290200 10/23 (43%)
COG5048 475..>529 CDD:227381 9/21 (43%)
C2H2 Zn finger 479..499 CDD:275368 6/17 (35%)
zf-H2C2_2 491..515 CDD:290200 2/5 (40%)
C2H2 Zn finger 507..527 CDD:275368
Ikzf1XP_011242004.1 Nitro_FMN_reductase <11..>59 CDD:382052 3/8 (38%)
C2H2 Zn finger 163..183 CDD:275368 7/19 (37%)
zf-H2C2_2 176..200 CDD:372612 12/23 (52%)
COG5048 187..>535 CDD:227381 29/77 (38%)
C2H2 Zn finger 191..211 CDD:275368 7/19 (37%)
zf-H2C2_2 203..228 CDD:372612 9/24 (38%)
C2H2 Zn finger 219..239 CDD:275368 6/19 (32%)
C2H2 Zn finger 247..268 CDD:275368 6/17 (35%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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