DRSC/TRiP Functional Genomics Resources

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Protein Alignment Clamp and Zfp46

DIOPT Version :9

Sequence 1:NP_001014498.1 Gene:Clamp / 35445 FlyBaseID:FBgn0032979 Length:566 Species:Drosophila melanogaster
Sequence 2:NP_001357580.1 Gene:Zfp46 / 22704 MGIID:99192 Length:470 Species:Mus musculus


Alignment Length:434 Identity:127/434 - (29%)
Similarity:175/434 - (40%) Gaps:149/434 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly   129 CDVCSDMFPHLALLNAHKRMHTDGEQQQQQQHNAQAGGDSIAVVSAQGLVQAQNIIGNGQMGQIQ 193
            |..|...|..::.||.|::.||               ||                          
Mouse   140 CSQCGKAFSQISDLNRHQKTHT---------------GD-------------------------- 163

  Fly   194 IVSSDTLEPVQQSVMQQQQHESKASKCINCG-----SSMLQQSKR--KGPKQVRCESCMQAEQTA 251
                                  :..||..||     ||.|.|.:|  .|.:...|..|.::    
Mouse   164 ----------------------RPYKCYECGKGFSRSSHLIQHQRTHTGERPYDCNECGKS---- 202

  Fly   252 QQQQQLFVAQDGQMAHPVQIISTTPQAQAQLQQIVAAQTGGTTPKREASSGSGHHPVKKRNSQQM 316
                      .|:.:|.:|                 .||..|          |..|.|      .
Mouse   203 ----------FGRSSHLIQ-----------------HQTIHT----------GEKPHK------C 224

  Fly   317 TKCQK--CNGSGVVLVGQHSHASHSGVGGSVKQSVTVKTECLSCRNPSKPFSCNICGGLFSRYSS 379
            |:|.|  |..|.::   ||.. :|||                     .||:.|..||..|||.|.
Mouse   225 TECGKSFCRLSHLI---QHQR-THSG---------------------EKPYECEECGKSFSRSSH 264

  Fly   380 LWSHKKLHSGEKNYKCSICGLAFAKAVYLKNHARIHTGEKPYKCQTCGMQFSQSPHLKNHERTHS 444
            |..|::.|:|||.|:|..||..|::...|..|.|:||||:||||..||..|||:..|..|.|.|:
Mouse   265 LAQHQRTHTGEKPYECHECGRGFSERSDLIKHYRVHTGERPYKCDECGKNFSQNSDLVRHRRAHT 329

  Fly   445 GERPYVCGVCDKGFARHATLWNHRRIHTGEKPYKCEICGSAFSQAAHLKNHAKVHSGEKPYKCEI 509
            ||:||.|..|.:.|:|.:.|..|:|.|||||||:|..||.:||:::||..|.|:|:|||||:|..
Mouse   330 GEKPYHCNECGENFSRISHLVQHQRTHTGEKPYECTACGKSFSRSSHLITHQKIHTGEKPYECNE 394

  Fly   510 CSAAFADRFALKRHRGIH---QKYG--QTAPRQTSSDGMIVHKQ 548
            |..:|.:|..|.:|:..|   :.|.  |.....|.|..:|.|::
Mouse   395 CWRSFGERSDLIKHQRTHTGEKPYECVQCGKGFTQSSNLITHQR 438

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ClampNP_001014498.1 COG5048 <359..498 CDD:227381 66/138 (48%)
C2H2 Zn finger 367..387 CDD:275368 9/19 (47%)
zf-H2C2_2 379..403 CDD:290200 10/23 (43%)
C2H2 Zn finger 395..415 CDD:275368 7/19 (37%)
zf-H2C2_2 407..432 CDD:290200 14/24 (58%)
C2H2 Zn finger 423..443 CDD:275368 9/19 (47%)
zf-H2C2_2 435..460 CDD:290200 11/24 (46%)
C2H2 Zn finger 451..471 CDD:275368 7/19 (37%)
zf-H2C2_2 464..488 CDD:290200 14/23 (61%)
COG5048 475..>529 CDD:227381 25/56 (45%)
C2H2 Zn finger 479..499 CDD:275368 9/19 (47%)
zf-H2C2_2 491..515 CDD:290200 12/23 (52%)
C2H2 Zn finger 507..527 CDD:275368 6/19 (32%)
Zfp46NP_001357580.1 KRAB 13..54 CDD:366587
C2H2 Zn finger 140..160 CDD:275368 6/19 (32%)
COG5048 163..>470 CDD:227381 118/396 (30%)
C2H2 Zn finger 168..188 CDD:275368 8/19 (42%)
C2H2 Zn finger 196..216 CDD:275368 7/50 (14%)
C2H2 Zn finger 224..244 CDD:275368 7/23 (30%)
C2H2 Zn finger 252..272 CDD:275368 9/19 (47%)
C2H2 Zn finger 280..300 CDD:275368 7/19 (37%)
C2H2 Zn finger 308..328 CDD:275368 9/19 (47%)
C2H2 Zn finger 336..356 CDD:275368 7/19 (37%)
C2H2 Zn finger 364..384 CDD:275368 9/19 (47%)
C2H2 Zn finger 392..412 CDD:275368 6/19 (32%)
C2H2 Zn finger 420..440 CDD:275368 5/19 (26%)
C2H2 Zn finger 448..468 CDD:275368
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR24381
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.100

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