DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Clamp and Zfp13

DIOPT Version :9

Sequence 1:NP_001014498.1 Gene:Clamp / 35445 FlyBaseID:FBgn0032979 Length:566 Species:Drosophila melanogaster
Sequence 2:XP_011244722.1 Gene:Zfp13 / 22654 MGIID:99159 Length:546 Species:Mus musculus


Alignment Length:601 Identity:139/601 - (23%)
Similarity:212/601 - (35%) Gaps:186/601 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly    14 INGQPATIQYQTA-DGTILK----QPKIEGQKTEQQ--------------------------PTF 47
            ::||..|:...|: :.|.:|    :|..||...|.:                          |:.
Mouse    31 LSGQEETVPLGTSQESTHIKAEPEEPHSEGASREDRTPGTQRWMSPCPGPKDKGPFLPGGVVPSP 95

  Fly    48 YYTTNGNGGTVN-----------LAQLATTDDNKTCYIAQPVGG--------YNYALVNGMPLNQ 93
            :......||...           .:|:..|.::...|::|...|        :...::.|   ..
Mouse    96 WTPVLSRGGRTRERKMAAALLTAWSQMPVTFEDVALYLSQEEWGRLDHTQQNFYRDVLQG---KN 157

  Fly    94 GAALG--------IATVDAQG----RIQIVNQNKPIAANTISNISFKCDVCSDMFPHLAL--LNA 144
            |.|||        :..:..:|    ||....:.:.:.:..:.        ...:.|.||:  |..
Mouse   158 GLALGFPFSRPFWVPQIQGKGQVASRITGAEERRGLGSGAVE--------MGKVVPALAVATLED 214

  Fly   145 HKRMHT-----DGEQQQQQQHNAQAGGDSIAVVSAQGLVQAQNIIGNGQMGQIQIVSSDTLEPVQ 204
            .|.:.|     .||..:..||.|...|..:.             ...|:.||::...|:: .|::
Mouse   215 TKSIRTRARWAPGEDPKCGQHVASGPGTKLT-------------RDTGKAGQLKPAPSES-RPLK 265

  Fly   205 QSVMQQQQHESKASKCINCGSSMLQQSKRKGPKQVRCESCMQAEQTAQQQQQLFVAQDGQMAHPV 269
            .......:..|:..:.:..|...|......|.|..:||.|                         
Mouse   266 TPEDSGPEKPSEGEEALKSGEEGLVPDGDTGKKTYKCEQC------------------------- 305

  Fly   270 QIISTTPQAQAQLQQIVAAQTGGTTPKREASSGSG----HHPVKKRNSQQMTKCQKCNGSGVVLV 330
                                            |.|    .|.|..|.:....|...|...| ...
Mouse   306 --------------------------------GKGFSWHSHLVTHRRTHTGEKPYTCTDCG-KRF 337

  Fly   331 GQHSH-----ASHSGVGGSVKQSVTVKTECLSCRNPSKPFSCNICGGLFSRYSSLWSHKKLHSGE 390
            |:.||     ..|:|                     .||::|..|...||.:|:|..|:::|:||
Mouse   338 GRSSHLIQHQIIHTG---------------------EKPYTCPSCWKSFSHHSTLIQHQRIHTGE 381

  Fly   391 KNYKCSICGLAFAKAVYLKNHARIHTGEKPYKCQTCGMQFSQSPHLKNHERTHSGERPYVCGVCD 455
            |.|.|..|...|.:...|..|...|||.||:||..|...|:||..|..|:|||:|.:||.|..|.
Mouse   382 KPYVCDRCAKRFTRRSDLVTHQGTHTGAKPHKCPICSKCFTQSSALVTHQRTHTGVKPYPCPECG 446

  Fly   456 KGFARHATLWNHRRIHTGEKPYKCEICGSAFSQAAHLKNHAKVHSGEKPYKCEICSAAFADRFAL 520
            |.|::.:.|..|.|.|||||||.|..||.:||.::||..|.:.|.|.:||.|.:|..:|:.|..|
Mouse   447 KCFSQRSNLIAHNRTHTGEKPYHCLDCGKSFSHSSHLTAHQRTHRGVRPYSCPLCGKSFSRRSNL 511

  Fly   521 KRHRGIHQKYGQTAPR 536
            .||..||    .|.|:
Mouse   512 HRHEKIH----TTGPK 523

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ClampNP_001014498.1 COG5048 <359..498 CDD:227381 60/138 (43%)
C2H2 Zn finger 367..387 CDD:275368 7/19 (37%)
zf-H2C2_2 379..403 CDD:290200 9/23 (39%)
C2H2 Zn finger 395..415 CDD:275368 5/19 (26%)
zf-H2C2_2 407..432 CDD:290200 11/24 (46%)
C2H2 Zn finger 423..443 CDD:275368 8/19 (42%)
zf-H2C2_2 435..460 CDD:290200 12/24 (50%)
C2H2 Zn finger 451..471 CDD:275368 7/19 (37%)
zf-H2C2_2 464..488 CDD:290200 14/23 (61%)
COG5048 475..>529 CDD:227381 24/53 (45%)
C2H2 Zn finger 479..499 CDD:275368 8/19 (42%)
zf-H2C2_2 491..515 CDD:290200 9/23 (39%)
C2H2 Zn finger 507..527 CDD:275368 7/19 (37%)
Zfp13XP_011244722.1 KRAB 124..179 CDD:214630 9/57 (16%)
C2H2 Zn finger 302..322 CDD:275368 8/76 (11%)
zf-H2C2_2 314..339 CDD:372612 6/25 (24%)
C2H2 Zn finger 330..350 CDD:275368 5/20 (25%)
zf-H2C2_2 342..367 CDD:372612 8/45 (18%)
C2H2 Zn finger 358..378 CDD:275368 7/19 (37%)
COG5048 <360..520 CDD:227381 70/163 (43%)
C2H2 Zn finger 386..406 CDD:275368 5/19 (26%)
C2H2 Zn finger 414..434 CDD:275368 8/19 (42%)
C2H2 Zn finger 442..462 CDD:275368 7/19 (37%)
C2H2 Zn finger 470..490 CDD:275368 8/19 (42%)
C2H2 Zn finger 498..518 CDD:275368 7/19 (37%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
00.000

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