DRSC/TRiP Functional Genomics Resources

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Protein Alignment Clamp and AU041133

DIOPT Version :10

Sequence 1:NP_001014498.1 Gene:Clamp / 35445 FlyBaseID:FBgn0032979 Length:566 Species:Drosophila melanogaster
Sequence 2:NP_001156536.1 Gene:AU041133 / 216177 MGIID:2143755 Length:498 Species:Mus musculus


Alignment Length:448 Identity:136/448 - (30%)
Similarity:193/448 - (43%) Gaps:106/448 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly   106 GRIQIVNQNKPIAANTISNISFKCDVCSDMFPHLALLNAHKRMHTDGEQQQQQQHNAQAGGDSIA 170
            |||.  .:.||          ::|..||.:|.:...|..|::.||     :::.:.....|.|. 
Mouse    97 GRIH--TEGKP----------YECKQCSQIFTNFCHLRKHEKKHT-----KEKLYECNHCGKSF- 143

  Fly   171 VVSAQGLVQAQNIIGNG-------QMGQIQIVSSDTLEPVQQSVMQQQQHE-SKASKCINCG--- 224
              .::..:|..|....|       :.|:....||:.|       :.::.|. .|...|.:||   
Mouse   144 --PSRNSLQIHNRTHTGEKPYDCNECGKAFTCSSNLL-------LHKRTHTGEKPYDCSDCGKAF 199

  Fly   225 --SSMLQQSKRK--GPKQVRCESC---------MQAEQTAQQQQQLFVAQDGQMAHPVQIISTTP 276
              ||.||..|||  |.|...|..|         :|..:.:..:::::...               
Mouse   200 ASSSNLQIHKRKHTGEKPYGCNQCGKAFAYSNALQKHERSHTREKIYECN--------------- 249

  Fly   277 QAQAQLQQIVAAQTGGTTPK-REASSGSGHHPVKKRNSQQMTKCQKCNGSGVVLVGQHSH-ASHS 339
                        |.|....: |...:...||.::|     ..:|.:|..:.......:.| .||:
Mouse   250 ------------QCGKAFARHRSLQNHEEHHTLEK-----PYECSQCGKAFAYSSNLYIHERSHT 297

  Fly   340 GVGGSVKQSVTVKTECLSCRNPSKPFSCNICGGLFSRYSSLWSHKKLHSGEKNYKCSICGLAFAK 404
            |                     .|||.|..||..|..:|||..|::.|:|||.|.|:.||.|||.
Mouse   298 G---------------------EKPFKCTQCGKAFPSHSSLQIHERTHTGEKPYDCNECGKAFAC 341

  Fly   405 AVYLKNHARIHTGEKPYKCQTCGMQFSQSPHLKNHERTHSGERPYVCGVCDKGFARHATLWNHRR 469
            ...|..|.|.|||||||.|..||..|:.|..|:.||:||:||:||.|..|.|.|||.:.|:.|.|
Mouse   342 RSNLLLHKRTHTGEKPYHCIECGKAFACSSSLQKHEKTHTGEKPYECNQCGKAFARRSDLYIHER 406

  Fly   470 IHTGEKPYKCEICGSAFSQAAHLKNHAKVHSGEKPYKCEICSAAFADRFALKRHRGIH 527
            ||||||||:|..||.||.....|:.|.:.|:|||||:|..|..||..||:|:.|...|
Mouse   407 IHTGEKPYECNQCGKAFVHCISLQRHERTHTGEKPYECNQCGKAFTRRFSLQVHERSH 464

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ClampNP_001014498.1 COG5048 <359..498 CDD:227381 70/138 (51%)
C2H2 Zn finger 367..387 CDD:275368 8/19 (42%)
C2H2 Zn finger 395..415 CDD:275368 9/19 (47%)
zf-H2C2_2 407..432 CDD:463886 14/24 (58%)
C2H2 Zn finger 423..443 CDD:275368 8/19 (42%)
C2H2 Zn finger 451..471 CDD:275368 9/19 (47%)
COG5048 475..>529 CDD:227381 25/53 (47%)
C2H2 Zn finger 479..499 CDD:275368 7/19 (37%)
C2H2 Zn finger 507..527 CDD:275368 8/19 (42%)
AU041133NP_001156536.1 KRAB 4..44 CDD:460171
C2H2 Zn finger 108..128 CDD:275368 6/19 (32%)
C2H2 Zn finger 136..156 CDD:275368 4/22 (18%)
COG5048 144..497 CDD:227381 121/381 (32%)
C2H2 Zn finger 164..184 CDD:275368 4/26 (15%)
C2H2 Zn finger 192..212 CDD:275368 9/19 (47%)
C2H2 Zn finger 220..240 CDD:275368 3/19 (16%)
C2H2 Zn finger 248..268 CDD:275368 3/46 (7%)
C2H2 Zn finger 276..296 CDD:275368 3/19 (16%)
C2H2 Zn finger 304..324 CDD:275368 8/19 (42%)
C2H2 Zn finger 332..352 CDD:275368 9/19 (47%)
C2H2 Zn finger 360..380 CDD:275368 8/19 (42%)
C2H2 Zn finger 388..408 CDD:275368 9/19 (47%)
C2H2 Zn finger 416..436 CDD:275368 7/19 (37%)
C2H2 Zn finger 444..464 CDD:275368 8/19 (42%)
C2H2 Zn finger 472..492 CDD:275368
Blue background indicates that the domain is not in the aligned region.

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