DRSC/TRiP Functional Genomics Resources

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Protein Alignment Clamp and LOC1278810

DIOPT Version :10

Sequence 1:NP_001014498.1 Gene:Clamp / 35445 FlyBaseID:FBgn0032979 Length:566 Species:Drosophila melanogaster
Sequence 2:XP_318443.6 Gene:LOC1278810 / 1278810 VectorBaseID:AGAMI1_012684 Length:416 Species:Anopheles gambiae


Alignment Length:302 Identity:89/302 - (29%)
Similarity:137/302 - (45%) Gaps:42/302 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly   240 RCESCMQAEQTAQQQQQLFVAQDGQMAHPVQIISTTPQAQAQLQQIVAAQTGGTTPKREASSGSG 304
            :.|.|::.| |.||..   |....::..|:|.....|.|. .:..::.:.|....||.:..:.:.
Mosquito   134 KIELCIENE-TIQQDD---VEISEELIDPLQDEEDQPLAN-YIIGVIESATNDNAPKDKVGTDTA 193

  Fly   305 HHPV-----------KKRNSQQMTK-----CQKCNGSGVVLVGQHSHASHSGVGGSVKQSVTVKT 353
            ...:           :.::|..:.|     |:.|.....:|..:..|                 |
Mosquito   194 KEQIGDQTITAATQERGQSSSLLPKLHSLMCEYCFKEFTLLTDKIEH-----------------T 241

  Fly   354 ECLSCRNPSKPFSC--NICGGLFSRYSSLWSHKKLHSGEKNYKCSICGLAFAKAVYLKNHARIHT 416
            |  |.::.:|||.|  ..||..|.....|.||.::||..:.:.|..|...|........|.|.|:
Mosquito   242 E--SHKSEAKPFKCVQEGCGKSFKDRVGLRSHVRIHSAVRRFGCRYCPRRFHTLGNQVTHERTHS 304

  Fly   417 GEKPYKCQTCGMQFSQSPHLKNHERTHSGERPYVCGVCDKGFARHATLWNHRRIHTGEKPYKCEI 481
            ||||:.|..||..|::..:||||.|.|:|||||.|.:|||.:..:.:...|.|.||.|:||.|..
Mosquito   305 GEKPFICPKCGKGFAEVGNLKNHIRFHTGERPYACNLCDKSYRTYYSRTIHMRSHTNERPYLCGD 369

  Fly   482 CGSAFSQAAHLKNHAKVHSGEKPYKCEICSAAFADRFALKRH 523
            ||..|..:..|..|.:.|:||:||:|..|:|.|:...:|:||
Mosquito   370 CGKGFYSSGKLTIHRRTHTGERPYECTSCTARFSATSSLRRH 411

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ClampNP_001014498.1 COG5048 <359..498 CDD:227381 54/140 (39%)
C2H2 Zn finger 367..387 CDD:275368 7/21 (33%)
C2H2 Zn finger 395..415 CDD:275368 5/19 (26%)
zf-H2C2_2 407..432 CDD:463886 11/24 (46%)
C2H2 Zn finger 423..443 CDD:275368 9/19 (47%)
C2H2 Zn finger 451..471 CDD:275368 6/19 (32%)
COG5048 475..>529 CDD:227381 20/49 (41%)
C2H2 Zn finger 479..499 CDD:275368 6/19 (32%)
C2H2 Zn finger 507..527 CDD:275368 7/17 (41%)
LOC1278810XP_318443.6 None

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