DRSC/TRiP Functional Genomics Resources

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Protein Alignment Clamp and ZNF440

DIOPT Version :10

Sequence 1:NP_001014498.1 Gene:Clamp / 35445 FlyBaseID:FBgn0032979 Length:566 Species:Drosophila melanogaster
Sequence 2:XP_005259788.1 Gene:ZNF440 / 126070 HGNCID:20874 Length:598 Species:Homo sapiens


Alignment Length:354 Identity:103/354 - (29%)
Similarity:155/354 - (43%) Gaps:70/354 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly   209 QQQQHE-SKASKCINCGSSMLQQSK-------RKGPKQVRCESCMQAEQTAQQQQQLFVAQDGQM 265
            |::.|. .|.:.|..||.:.:..|.       ..|....:|:.|                  |:.
Human   165 QERDHTGEKPNACKVCGKTFISHSSVRRHMVMHSGDGPYKCKFC------------------GKA 211

  Fly   266 AHPVQIISTTPQAQAQLQQIVAAQTGGTTPKREASSGSGHHPVKKR--NSQQMTKCQKCNGSGVV 328
            .|.:::.....:.....:.....|.|      ::.|.|..|.:.||  ..::..:.|:|   |..
Human   212 FHCLRLYLIHERIHTGEKPCECKQCG------KSFSYSATHRIHKRTHTGEKPYEYQEC---GKA 267

  Fly   329 LVGQHSHASHSGVGGSVKQSVTVKTECLSCRNPSKPFSC--------------NI-----CGGLF 374
            .....|:..|        :.:.:..:...|:...|.|:|              |:     ||...
Human   268 FHSPRSYRRH--------ERIHMGEKAYQCKECGKAFTCPRYVRIHERTHSRKNLYECKQCGKAL 324

  Fly   375 SRYSSLWSHKKLHSGEKNYKCSICGLAFAKAVYLKNHARIHTGEKPYKCQTCGMQFSQSPHLKNH 439
            |..:|..:|.:|||||:.|:|.|||..|......:.|.:||:|||||||:.||..|..|..|:.|
Human   325 SSLTSFQTHVRLHSGERPYECKICGKDFCSVNSFQRHEKIHSGEKPYKCKQCGKAFPHSSSLRYH 389

  Fly   440 ERTHSGERPYVCGVCDKGFARHATLWNHRRIHTGEKPYKCEICGSAFSQAAHLKN------HAKV 498
            ||||:||:||.|..|.|.|...:.|..|.|.|||||||:|:.||.||....:|::      |.::
Human   390 ERTHTGEKPYECKQCGKAFRSASHLRVHGRTHTGEKPYECKECGKAFRYVNNLQSHERTQTHIRI 454

  Fly   499 HSGEKPYKCEICSAAFADRFALKRHRGIH 527
            ||||:.|||:||...|....:.:||...|
Human   455 HSGERRYKCKICGKGFYCPKSFQRHEKTH 483

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ClampNP_001014498.1 COG5048 <359..498 CDD:227381 65/163 (40%)
C2H2 Zn finger 367..387 CDD:275368 7/38 (18%)
C2H2 Zn finger 395..415 CDD:275368 6/19 (32%)
zf-H2C2_2 407..432 CDD:463886 13/24 (54%)
C2H2 Zn finger 423..443 CDD:275368 9/19 (47%)
C2H2 Zn finger 451..471 CDD:275368 7/19 (37%)
COG5048 475..>529 CDD:227381 23/59 (39%)
C2H2 Zn finger 479..499 CDD:275368 7/25 (28%)
C2H2 Zn finger 507..527 CDD:275368 6/19 (32%)
ZNF440XP_005259788.1 KRAB 6..47 CDD:460171
C2H2 Zn finger 149..169 CDD:275368 1/3 (33%)
C2H2 Zn finger 177..197 CDD:275368 4/19 (21%)
zf-H2C2_2 189..212 CDD:463886 4/40 (10%)
COG5048 202..>492 CDD:227381 95/317 (30%)
C2H2 Zn finger 205..225 CDD:275368 4/37 (11%)
C2H2 Zn finger 233..253 CDD:275368 7/25 (28%)
C2H2 Zn finger 261..281 CDD:275368 5/30 (17%)
C2H2 Zn finger 289..309 CDD:275368 4/19 (21%)
C2H2 Zn finger 317..337 CDD:275368 5/19 (26%)
C2H2 Zn finger 345..365 CDD:275368 6/19 (32%)
C2H2 Zn finger 373..393 CDD:275368 9/19 (47%)
C2H2 Zn finger 401..421 CDD:275368 7/19 (37%)
C2H2 Zn finger 429..448 CDD:275368 6/18 (33%)
C2H2 Zn finger 463..483 CDD:275368 6/19 (32%)
Blue background indicates that the domain is not in the aligned region.

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