DRSC/TRiP Functional Genomics Resources

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Protein Alignment Clamp and ikzf3

DIOPT Version :9

Sequence 1:NP_001014498.1 Gene:Clamp / 35445 FlyBaseID:FBgn0032979 Length:566 Species:Drosophila melanogaster
Sequence 2:XP_031750661.1 Gene:ikzf3 / 100491406 XenbaseID:XB-GENE-994462 Length:377 Species:Xenopus tropicalis


Alignment Length:154 Identity:50/154 - (32%)
Similarity:75/154 - (48%) Gaps:22/154 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly   417 GEKPYKCQTCGMQFSQSPHLKNHERTHSGERPYVCGVCDKGFARHATLWNHRRIHTGEKPYKCEI 481
            ||:|::|..||..|:|..:|..|.:.|:||:|:.|.:|.....|...|..|.|.|:.|||||||.
 Frog    16 GERPFQCNQCGASFTQKGNLLRHGKLHTGEKPFKCHLCSYACQRRDALTGHLRTHSVEKPYKCEF 80

  Fly   482 CGSAFSQAAHLKNHAK---------------VHSGEKPYKCEICS--AAFADRFA---LKRHRGI 526
            ||.::.|.:.|:.|.:               .....:|.|.|:.|  |...||.|   .||...:
 Frog    81 CGRSYKQRSSLEEHKERCRIYQQNLSESATAASEDSRPPKPEMGSERALVLDRLASNVAKRKSTM 145

  Fly   527 HQKY-GQTAP-RQTSSDGMIVHKQ 548
            .||: |:..| .:.|.:|.:..|:
 Frog   146 PQKFIGEKQPCFEISYNGYLYDKE 169

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ClampNP_001014498.1 COG5048 <359..498 CDD:227381 33/95 (35%)
C2H2 Zn finger 367..387 CDD:275368
zf-H2C2_2 379..403 CDD:290200
C2H2 Zn finger 395..415 CDD:275368
zf-H2C2_2 407..432 CDD:290200 7/14 (50%)
C2H2 Zn finger 423..443 CDD:275368 7/19 (37%)
zf-H2C2_2 435..460 CDD:290200 8/24 (33%)
C2H2 Zn finger 451..471 CDD:275368 6/19 (32%)
zf-H2C2_2 464..488 CDD:290200 13/23 (57%)
COG5048 475..>529 CDD:227381 21/73 (29%)
C2H2 Zn finger 479..499 CDD:275368 7/34 (21%)
zf-H2C2_2 491..515 CDD:290200 7/40 (18%)
C2H2 Zn finger 507..527 CDD:275368 8/24 (33%)
ikzf3XP_031750661.1 COG5048 <19..153 CDD:227381 44/133 (33%)
C2H2 Zn finger 22..42 CDD:275368 7/19 (37%)
C2H2 Zn finger 50..70 CDD:275368 6/19 (32%)
C2H2 Zn finger 78..94 CDD:275368 6/15 (40%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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