DRSC/TRiP Functional Genomics Resources

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Protein Alignment ttm3 and Timm50

DIOPT Version :9

Sequence 1:NP_610130.1 Gene:ttm3 / 35437 FlyBaseID:FBgn0032971 Length:343 Species:Drosophila melanogaster
Sequence 2:NP_079892.1 Gene:Timm50 / 66525 MGIID:1913775 Length:353 Species:Mus musculus


Alignment Length:263 Identity:126/263 - (47%)
Similarity:165/263 - (62%) Gaps:5/263 - (1%)


- Green bases have known domain annotations that are detailed below.


  Fly    66 GSLFSIVMWAIYKLGKPEEDHRG-PIEDEFSQLPWFRQYIMRMWHTLQYYEKMMEEPQMARLLPN 129
            |...|||    |..|....|..| .|.|||...|...|.:.|.:...:.|.:|:.||....|||:
Mouse    77 GGTVSIV----YIFGNNPVDENGTKIPDEFDSDPILVQQLRRTYKYFKDYRQMIIEPTSPCLLPD 137

  Fly   130 VVPPPYIQPPYSLVLEIKDVLVHPDWTYQTGWRFKKRPGVDYFLQQCSRNFEIVIYTSEQGMTAF 194
            .:..||.||||:||||:..||:||:|:..||||||||||::...||.:..:||||:|||.|||||
Mouse   138 PLREPYYQPPYTLVLELTGVLLHPEWSLATGWRFKKRPGIETLFQQLAPLYEIVIFTSETGMTAF 202

  Fly   195 PLLDALDPYGYIKYRLVRGATDLVEGQHTKNLDYLNRDLSRVIVVDCDPYTTPLHPDNSLVLTKW 259
            ||:|::||:|:|.|||.|.||..:||.|.|::..||||.:||:||||......|.|.|.:.|..|
Mouse   203 PLIDSVDPHGFISYRLFRDATRYMEGHHVKDISCLNRDPARVVVVDCKKEAFRLQPFNGVALRPW 267

  Fly   260 LGNDDDVQLFDLTAFLQLIAEHQVNDVREVLRYYRQFEDPMEQFKDNQRRLQEQSQESIQNLPTS 324
            .||.||..|.||:|||:.||.:||.|||.||.:|...:||:|.||..|.||:::.|:.:..|..|
Mouse   268 DGNSDDRVLLDLSAFLKTIALNQVEDVRTVLEHYALEDDPLEAFKQRQSRLEQEEQQRLAELSKS 332

  Fly   325 ERQ 327
            .||
Mouse   333 NRQ 335

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ttm3NP_610130.1 CPDc 138..265 CDD:214729 70/126 (56%)
HIP1_clath_bdg 276..332 CDD:293123 23/52 (44%)
Timm50NP_079892.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 23..59
NIF 148..295 CDD:281081 81/146 (55%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167844429
Domainoid 1 1.000 178 1.000 Domainoid score I3538
eggNOG 1 0.900 - - E1_COG5190
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 260 1.000 Inparanoid score I3098
Isobase 1 0.950 - 0.917438 Normalized mean entropy S1903
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0003614
OrthoInspector 1 1.000 - - otm42956
orthoMCL 1 0.900 - - OOG6_102279
Panther 1 1.100 - - O PTHR12210
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X2489
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1413.700

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