DRSC/TRiP Functional Genomics Resources

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Protein Alignment ttm3 and ctdspl3

DIOPT Version :9

Sequence 1:NP_610130.1 Gene:ttm3 / 35437 FlyBaseID:FBgn0032971 Length:343 Species:Drosophila melanogaster
Sequence 2:XP_021335375.1 Gene:ctdspl3 / 571337 ZFINID:ZDB-GENE-141215-56 Length:360 Species:Danio rerio


Alignment Length:313 Identity:80/313 - (25%)
Similarity:141/313 - (45%) Gaps:64/313 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly    12 KSIGYIGKKKTCLLSPCEKI-----CLNSARKTVQRCDKNY-SPPKLRRIKNFYTYSVVLGSLFS 70
            |::..:..|::...:|...:     .||.|.:::.....:: :||:.|...|       .|.|||
Zfish    66 KALSAVVNKESGFKTPVHHLRERHSSLNPAARSLYSPAVHFLTPPRDREQPN-------TGPLFS 123

  Fly    71 IVMWAIYKLGKPEEDHR-------GPI-EDEFSQLPWFRQYIMRMWHTLQYYEKMMEEPQMARLL 127
                       ||  ||       .|: |||.::         .::....:.:.:....|.:|.:
Zfish   124 -----------PE--HRVFGYSAASPLSEDEENE---------EVFSPFTFIKNIPNRSQQSRPV 166

  Fly   128 PNV--VPP-PYIQPPYSLVLEIKDVLVH------PDWTYQTGWRFKK---------RPGVDYFLQ 174
            ..|  :|| ....|..:|||::.:.||.      ||..|....||:.         ||.|..|||
Zfish   167 SAVRDIPPKTRSTPAATLVLDLDETLVFSSLNVIPDAEYTFNTRFQDHKYKVYVILRPHVREFLQ 231

  Fly   175 QCSRNFEIVIYTSEQGMTAFPLLDALDPYGYI-KYRLVRGATDLVEGQHTKNLDYLNRDLSRVIV 238
            ..:::||:.:|||.:...|..::|.|||...: ::||.:.....|.|.:.|:|..|.||||:.::
Zfish   232 AMTKHFEMFVYTSAKKEYAEKIVDILDPNKKLFRHRLYQDDCACVLGHYIKDLTILERDLSKTVI 296

  Fly   239 VDCDPYTTPLHPDNSLVLTKWLGNDDDVQLFDLTAFLQLIAEHQVNDVREVLR 291
            :|..|:|.|.|..|.:.:..|:|:.:|.:|..|..:::.:.  ..:|.|.||:
Zfish   297 LDNAPHTFPYHLMNMIPIKSWIGDQEDRELQKLIPYMEKLV--HADDFRNVLK 347

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ttm3NP_610130.1 CPDc 138..265 CDD:214729 46/142 (32%)
HIP1_clath_bdg 276..332 CDD:293123 4/16 (25%)
ctdspl3XP_021335375.1 Atrophin-1 <19..182 CDD:331285 28/144 (19%)
NIF 183..343 CDD:308590 49/161 (30%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5190
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.810

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