DRSC/TRiP Functional Genomics Resources

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Protein Alignment ttm3 and scpl-4

DIOPT Version :9

Sequence 1:NP_610130.1 Gene:ttm3 / 35437 FlyBaseID:FBgn0032971 Length:343 Species:Drosophila melanogaster
Sequence 2:NP_505722.1 Gene:scpl-4 / 179481 WormBaseID:WBGene00011897 Length:452 Species:Caenorhabditis elegans


Alignment Length:274 Identity:108/274 - (39%)
Similarity:164/274 - (59%) Gaps:11/274 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly    51 KLRRIKNFYTYSVVLGSLFSIVMWAIYKLGKPEEDHRG-PIEDEFS---QLPWFRQYIMRMWHTL 111
            ::.|......|.:..||:...:.:..| .|:.:.|..| .|.||||   ..|::     |:.::.
 Worm   161 RMERNTRIGAYVLFGGSIIGFISFCFY-YGRAQRDEFGNVISDEFSGSFLAPFY-----RIANSF 219

  Fly   112 QYYEKMMEEPQMARLLPNVVPPPYIQPPYSLVLEIKDVLVHPDWTYQTGWRFKKRPGVDYFLQQC 176
            :.:...:.||...:|||:.:|.||:||.|::|:|:|::||||:|||:||:||.|||.:||||...
 Worm   220 KLWRDYVVEPAREQLLPDPLPAPYLQPKYTIVIELKNILVHPEWTYKTGYRFLKRPALDYFLDVI 284

  Fly   177 S-RNFEIVIYTSEQGMTAFPLLDALDPYGYIKYRLVRGATDLVEGQHTKNLDYLNRDLSRVIVVD 240
            . .|||:|||:||..|||.|::|:.||...|.|:|.|..|..:.|.|.|:|..||||||:||.:|
 Worm   285 GYPNFEVVIYSSESMMTAAPVVDSFDPKQRIMYKLFRDCTKYMNGHHVKDLSKLNRDLSKVIYID 349

  Fly   241 CDPYTTPLHPDNSLVLTKWLGNDDDVQLFDLTAFLQLIAEHQVNDVREVLRYYRQFEDPMEQFKD 305
            .|..:..|:|:|.|.:.:|.||.||..|.||...|:.|......|||.:|:||.|::||.::|:.
 Worm   350 FDAKSGQLNPENMLRVPEWKGNMDDTSLVDLAELLKTIHLSDAEDVRPMLQYYSQYDDPAKEFRR 414

  Fly   306 NQRRLQEQSQESIQ 319
            ....|.:|.::..|
 Worm   415 RAVYLSQQEEQKKQ 428

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ttm3NP_610130.1 CPDc 138..265 CDD:214729 64/127 (50%)
HIP1_clath_bdg 276..332 CDD:293123 14/44 (32%)
scpl-4NP_505722.1 NIF 248..396 CDD:281081 71/147 (48%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C160163384
Domainoid 1 1.000 161 1.000 Domainoid score I2440
eggNOG 1 0.900 - - E1_COG5190
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 245 1.000 Inparanoid score I2048
Isobase 1 0.950 - 0.917438 Normalized mean entropy S1903
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0003614
OrthoInspector 1 1.000 - - otm14786
orthoMCL 1 0.900 - - OOG6_102279
Panther 1 1.100 - - O PTHR12210
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X2489
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1413.700

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