DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment tsh and Tshz3

DIOPT Version :9

Sequence 1:NP_523615.2 Gene:tsh / 35430 FlyBaseID:FBgn0003866 Length:954 Species:Drosophila melanogaster
Sequence 2:XP_038967676.1 Gene:Tshz3 / 308523 RGDID:1306322 Length:1083 Species:Rattus norvegicus


Alignment Length:1073 Identity:213/1073 - (19%)
Similarity:340/1073 - (31%) Gaps:356/1073 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly    85 VPQSLPSQPPSMEAYL--HMVAAAAQQYGFPLAAAAAAGAGPRLPLPLANEAAAPFKLPPQASPT 147
            :|:.....|....||:  .:.|||..:.........|.|           |.:|.:..|.:....
  Rat     1 MPRRKQQAPRRAAAYVSDELKAAALVEDDIEPEEQVADG-----------EPSAKYMCPEKELSK 54

  Fly   148 A--SSNNSEALDFRTNLYGRAESAEPPASEGEEEEFDDGANNPLDLSVGTRKRGHESEPQLGHIQ 210
            |  |..||.|.:|         |:....||....|..|   ...|....:.|...|::    .:|
  Rat    55 ACPSYQNSPAAEF---------SSHEMDSESHISETSD---RMADFESSSIKNEEETK----EVQ 103

  Fly   211 VKKMFKSDSPPANSVASPSASQLLPGVNPYLAAVAAANIFRAGQFPDWNSKNDLVVDPLEKMSDI 275
            |        |..::..|.|..|:....|.:|     :|.:       |::.|..:..|   .|:.
  Rat   104 V--------PLEDTTVSDSLEQMKAVYNNFL-----SNSY-------WSNLNLNLHQP---SSEN 145

  Fly   276 VKGGAS----------GMGTKEKMHSSKATTPQAASQPPKSPVQPTPN---------QNSESGGG 321
            ..||:|          |.|:.:...|:.|.|.|..||   :.:.|.|:         |:|:..|.
  Rat   146 NGGGSSSSSSSSSSSCGSGSFDWHQSAMAKTLQQVSQ---NRMLPEPSLFSTVQLYRQSSKLYGS 207

  Fly   322 SGGGAAGSGAVTKARHNIWQSHWQNKGVASSVFRCVWCKQSFPTLEALTTHMKDSKHCGVNVPPF 386
            ...||                         |.|||..|..::.||..||.||.::.|        
  Rat   208 IFTGA-------------------------SKFRCKDCSAAYDTLVELTVHMNETGH-------- 239

  Fly   387 GNLPSNNPQPQHHHPTPPPPPQNHNLRKHSSGSASNHSPSANVKNAFQYRGDPPTPLPRKLVRGQ 451
                    ....:|.|     .|:|.::.|.                          |||    :
  Rat   240 --------YRDDNHET-----DNNNPKRWSK--------------------------PRK----R 261

  Fly   452 NVWLGKGVEQAMQILKCMRCGESFRSLGEMTKHMQETQHYTNI---------------------- 494
            ::...:|.|.|.::||||.||.||.||.:::.||.:|:||..:                      
  Rat   262 SLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVHMIKTKHYQKVPLKEPVTPVAAKIIPAARKKPS 326

  Fly   495 -------------------LSQEQSISIKSGNANANSDAKESHNSLSSE----ESRTLSAVLTCK 536
                               ||.......|:.|.....:.:..|.:.:|.    |:|. |.:|.|.
  Rat   327 LELELPSSPDSTGGTPKATLSDASDALQKNSNPYITPNNRYGHQNGASYAWHFEARK-SQILKCM 390

  Fly   537 VCDKAFNSLGDLSNHMAKNNHYAEPLLQSAGARKRPAPKKREKSLP-VRKLLEMKGGS----GTT 596
            .|..:.::|.:|:.||....|:   :..:..|.|:..|.......| :..||:.|..|    .||
  Rat   391 ECGSSHDTLQELTAHMMVTGHF---IKVTNSAMKKGKPIMETPVTPTITTLLDEKVQSVPLAATT 452

  Fly   597 QEDHSNEKTSVQGKPGLGPGGGDKNDAALFAERMRQYITGVKAPEEIAKV---AAAQLLAKNKSP 658
            ....||...||..|..:........:.|:..|:.::   ..||.||..|.   :....|.:|   
  Rat   453 FTSPSNTPASVSPKLTVEIKKEVDKEKAVLDEKPKE---KEKASEEEEKYDISSKYHYLTEN--- 511

  Fly   659 ELVEQKNGG-----------------------------SAKAA-----------GASSVLSAIEQ 683
            :|.|...||                             |..||           |:|...:.::.
  Rat   512 DLEESPKGGLDILKSLENTVTSAINKAQNGTPSWGGYPSIHAAYQLPNMMKLSLGSSGKSTPLKP 576

  Fly   684 MFTTSFDTPPRHASLPASSPSNSSTKNTSPVASS-------ILKRLGIDETVDYNKPLIDTNDPY 741
            ||..|....|.......|.||:    .|||:..:       ::|:: .::.....:.:.:.:...
  Rat   577 MFGNSEIVSPTKTQTLVSPPSS----QTSPMPKTNFHAMEELVKKV-TEKVAKVEEKMKEPDSKL 636

  Fly   742 YQHYRYTSSERSGSECSAEARPRLDAPTPEKQQQGGGHDEESSKPAIKQE--REAESKPVKMEIK 804
            ....|.|.     |.||:|.    ..|...:...|.|...:.:.|:..::  :||......:|..
  Rat   637 SPPKRATP-----SPCSSEQ----SEPIKMEASSGSGFKSQENSPSPPRDVCKEASPSAEPVENG 692

  Fly   805 SEFV----------------DEPNEAEETSKMEA--AVVN---GSAT--------------NNNN 834
            .|.|                |.|.|....:.:.|  :|:|   |.|.              ..:|
  Rat   693 KELVKPLSGGSLSGSTAIITDHPPEQPFVNPLSALQSVMNIHLGKAAKPSLPALDPMSMLFKMSN 757

  Fly   835 NIVERSSPKTP-------------------------------SSAASPQTRLLPP--RSPAESQR 866
            ::.|:::..||                               ....|..:.||.|  .|||.|..
  Rat   758 SLAEKAAVATPPPLQAKKAEHLDRYFYHVNNDQPIDLTKGKSDKGCSLGSGLLSPTSTSPATSSS 822

  Fly   867 SVT--PKSPASSHKSYDGSSEGTKKFPSDSLNALSSMFDSLGSSGAGANSRAKLAAAAAAGGSES 929
            :||  ..|...|..|.....|......||.|..|:....|..|:.:..:.::.:..|......||
  Rat   823 TVTTAKTSAVVSFMSNSPLRENALSDISDMLKNLTESHTSKSSTPSSISEKSDIDGATLEEAEES 887

  Fly   930 -PENLTAGGNS-------LAALRQFCVKKEKTA 954
             |.....|..|       |....||.....:|:
  Rat   888 TPAQKRKGRQSNWNPQHLLILQAQFAASLRQTS 920

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
tshNP_523615.2 zf-C2H2_2 <354..>382 CDD:289522 11/27 (41%)
C2H2 Zn finger 356..378 CDD:275371 8/21 (38%)
C2H2 Zn finger 468..490 CDD:275371 11/21 (52%)
C2H2 Zn finger 535..557 CDD:275371 6/21 (29%)
Tshz3XP_038967676.1 C2H2 Zn finger 217..239 CDD:275371 8/21 (38%)
C2H2 Zn finger 278..300 CDD:275371 11/21 (52%)
homeodomain 894..962 CDD:238039 6/27 (22%)
zf-met 1043..1066 CDD:403930
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166340504
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 60 1.000 Inparanoid score I5308
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - mtm8976
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR12487
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
55.080

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