DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment tsh and tshz1

DIOPT Version :9

Sequence 1:NP_523615.2 Gene:tsh / 35430 FlyBaseID:FBgn0003866 Length:954 Species:Drosophila melanogaster
Sequence 2:XP_004915319.1 Gene:tshz1 / 101730769 XenbaseID:XB-GENE-13579725 Length:1076 Species:Xenopus tropicalis


Alignment Length:953 Identity:189/953 - (19%)
Similarity:315/953 - (33%) Gaps:326/953 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly   143 QASPTASSNNSEALDFRTNLYGR---------AESAEPPASEGEEEEFDDGANNPLDLSVGTRKR 198
            |.||.:|:.|.:|      .||.         |:.....:.||:::|  ||.|..          
 Frog    60 QNSPISSATNQDA------GYGSPFSEASDQLADFKSTSSKEGQDKE--DGQNTE---------- 106

  Fly   199 GHESEPQLGHIQVKKMFKS------------DSPPANSVASPSASQLLPGVNPYLAAVAAANIFR 251
             :.|.|.....|:|.::.:            |...:|...||||                     
 Frog   107 -NASYPSDSLAQIKAVYTNLLSECCWSNLALDLKKSNEKLSPSA--------------------- 149

  Fly   252 AGQFPDWNSKNDLVVDPLEKMSDIVKGGASGMGTKEKMHSSKATTPQAASQPPKSPVQPTPNQNS 316
                   |:.|       ...|| ..|..|..||...:.||..|....:.....|        ||
 Frog   150 -------NTNN-------SSQSD-TTGVKSDPGTPTTITSSSCTNTSTSISVTTS--------NS 191

  Fly   317 ESGGGSGGGAAGSGAVTK-------------ARHNIWQSHWQNKGVASSV------FRCVWCKQS 362
            .....:.|......|:.|             :..:..|.:.||..:..||      |||..|..:
 Frog   192 TICNSAPGYDWHQAALAKTLQQTSYGLLPEPSLFSTVQLYRQNNKLYGSVFTGASKFRCKDCSAA 256

  Fly   363 FPTLEALTTHMKDSKHCGVNVPPFGNLPSNNPQPQHHHPTPPPPPQNHNLRKHSSGSASNHSPSA 427
            :.||..||.||.::          |:...:|              ::.|..|....|.       
 Frog   257 YDTLVELTVHMNET----------GHYRDDN--------------RDRNAEKTRRWSK------- 290

  Fly   428 NVKNAFQYRGDPPTPLPRKLVRGQNVWLGKGVEQAMQILKCMRCGESFRSLGEMTKHMQETQHYT 492
                            |||    :::...:|.|.|.::||||.||.||.||.:::.||.:|:||.
 Frog   291 ----------------PRK----RSLMEMEGKEDAQKVLKCMYCGHSFESLQDLSVHMIKTKHYQ 335

  Fly   493 NILSQE-----------------QSISIK--------SGNANANSDAKES--------------- 517
            .:..:|                 |.|::.        |..|:.:..||:.               
 Frog   336 KVPLKEPVPAITKLVPSTKKRALQDIALPDSPEQAGISPGASVSETAKDPKAANPYVTPNNRYGY 400

  Fly   518 HNSLS---SEESRTLSAVLTCKVCDKAFNSLGDLSNHMAKNNHY----------AEPLLQSAGAR 569
            .|..|   ..|:|. :.:|.|..|..:.::|..|:.||....|:          .:.|:..|...
 Frog   401 QNGASYTWQFEARK-AQILKCMECGSSHDTLQQLTAHMMVTGHFLKVTNSASKKGKQLVMDAIVE 464

  Fly   570 KR----PAPKKREKSLPVRKLLEMKGGSGTTQEDHSNEKTSVQGKPGLGPGGGDKNDAALFAERM 630
            ::    |.|......||...:  .|.....|...||.|:..:: |..:..|..:|.         
 Frog   465 EKIQSIPLPPTTHARLPASYI--KKPPDSPTGSTHSEERKDLE-KEKINNGEVEKK--------- 517

  Fly   631 RQYITGVKA----PEEIAKVAAAQLLAKNKSPELVEQKNGGSAKAAGASSVLSAIEQMFTTSFDT 691
                  :|.    ||:|......|.|   :..:|.:...||       ..:|.::|...|::...
 Frog   518 ------IKEENEDPEKIEPATVYQYL---REEDLDDSPKGG-------LDILKSLENTVTSAISK 566

  Fly   692 -----------PPRHAS--LPAS----SPSNSSTKNTSPVASSILKRLGIDETVDYNKPLIDTND 739
                       |..||:  ||.:    .||..|.:.....|||: |.:..|..: .:.|...|..
 Frog   567 AQNGAPSWGGYPSIHAAYQLPGTVKSLQPSVQSVQIQPSYASSV-KTMTSDHAL-IHSPGSLTPP 629

  Fly   740 PYYQHYRYTSSERSGSECSAEARPRLDAPTPEKQQQGGGHDEESSKPAIKQEREAESKPVKMEIK 804
            |:..:  .::.|....:.:.:...:.:....||::   ....:.|.|..|:.:|. .||  .|:|
 Frog   630 PHKSN--VSAMEELVEKVTGKITVKKEEKVLEKEK---AIPVKPSSPVAKENKEI-LKP--EEVK 686

  Fly   805 SEFVDEPNEAE----------------ETSKMEAAVVNGSATNNNNNIVERSSPK----TPSSA- 848
            ::.:.:.||.|                .|..::|.|.||.   |:..|:...||:    .|.|| 
 Frog   687 NKVLKKNNETEIQKAKKEPQIEPLALNGTESLKAKVTNGC---NSLGIITDHSPEPSFINPLSAL 748

  Fly   849 -----------ASPQTRLLPPR------SPAESQRSVTPKSPASSHKS-----YDGSSEGTKKFP 891
                       :.|.:..|.|.      |.:...:.:.|.:|....:|     |:.|.:......
 Frog   749 QSIMNTHLGKVSKPVSPSLDPLAMLYKISNSMLDKPIYPTTPVKQVESIDRYYYEDSDQPIDLTK 813

  Fly   892 SDSLNALSSMFDSLGSSGAGANSRAKLAAAAAAGGSESPENLT 934
            |.:...::|:.|::.|         .|..:|....|:..:|||
 Frog   814 SKNKPLVTSITDTVSS---------PLRESALMDISDMVKNLT 847

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
tshNP_523615.2 zf-C2H2_2 <354..>382 CDD:289522 10/27 (37%)
C2H2 Zn finger 356..378 CDD:275371 8/21 (38%)
C2H2 Zn finger 468..490 CDD:275371 11/21 (52%)
C2H2 Zn finger 535..557 CDD:275371 6/21 (29%)
tshz1XP_004915319.1 C2H2 Zn finger 250..272 CDD:275371 8/31 (26%)
C2H2 Zn finger 311..333 CDD:275371 11/21 (52%)
homeodomain 885..953 CDD:238039
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - mtm9401
Panther 1 1.100 - - O PTHR12487
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
33.100

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