DRSC/TRiP Functional Genomics Resources

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Protein Alignment tsh and tshz2

DIOPT Version :9

Sequence 1:NP_523615.2 Gene:tsh / 35430 FlyBaseID:FBgn0003866 Length:954 Species:Drosophila melanogaster
Sequence 2:XP_002935441.3 Gene:tshz2 / 100497744 XenbaseID:XB-GENE-486894 Length:1024 Species:Xenopus tropicalis


Alignment Length:779 Identity:160/779 - (20%)
Similarity:251/779 - (32%) Gaps:298/779 - (38%)


- Green bases have known domain annotations that are detailed below.


  Fly   177 EEEEFDDGANNPLDLSVGTRKRGH----ESEPQLGHIQVKKMFKSDSPPANSVASPSASQLLPGV 237
            ::||.||.:|     |:..::...    :.|.::|. ::|:.|...|.|.:.:.:          
 Frog    29 DDEEEDDDSN-----SIAQQQDSSYSPTDEEQEIGG-ELKRSFGYQSSPGSHLCN---------- 77

  Fly   238 NPYLAAVAAANIFRAGQFPDWNSKNDLVVDPLEKMSDIVKGGASGMGTKEKMHSSKATTPQAASQ 302
                              .|..|:: :|.|..:|.|||     .|..:|:             :|
 Frog    78 ------------------QDGESES-VVSDSSDKGSDI-----KGPSSKD-------------AQ 105

  Fly   303 PPKSPVQPTPNQNSESGGGSGGGAAGSGAVTK---ARHNIW-QSHWQNKGVASSVFRCVWCKQSF 363
            .||:...|.|.            |.|...:.|   |..||. .|:|:..|:              
 Frog   106 DPKTSPAPKPQ------------AEGHDCMNKMKTAYANILSDSYWERIGL-------------- 144

  Fly   364 PTLEALTTHMKDSKHCGVNVPPFGNLPSNNPQPQHHHPTPPPPPQNHNLRK--HSSGSASNHSPS 426
                            .|.||                         |:.||  .|...||     
 Frog   145 ----------------NVKVP-------------------------HSERKVCESRNGAS----- 163

  Fly   427 ANVKNAFQYRGDPPTP-----LPRKLVRGQNVWLGKGVEQAMQI-----------------LKCM 469
               |..|.:..|..:.     ||.|.|...|::      .::|:                 .:|.
 Frog   164 ---KTDFDWHQDALSKSLQQNLPSKSVSKPNLF------SSVQLYRQNAKMYGTVFTGASRFRCR 219

  Fly   470 RCGESFRSLGEMTKHMQETQHYTNILSQEQSISIKSGNANANSDAKESHNSLSSEESRTLSAVLT 534
            :|..::.:|.|:|.||.||.||       |..:.|.....:.|.:|....:....:......||.
 Frog   220 QCSAAYDTLVELTVHMNETGHY-------QDDNRKKDKCISTSYSKSRKRAFHDMDKEDAQKVLK 277

  Fly   535 CKVCDKAFNSLGDLSNHMAKNNHYAE-PLLQSAGARKRPAPKKREKSL-PVRKLL---------- 587
            |..|..:|:||.|||.||.|..||.: ||       |.|.|....|.: |.||.:          
 Frog   278 CMFCGDSFDSLQDLSVHMIKTKHYQKVPL-------KEPIPTLSSKLVSPARKRVFEATRPCSPD 335

  Fly   588 EMKGGSGTTQEDHSNEKTSVQGKPGLGPGGGDKNDAALFAERMRQYITGVKAPEEIAKVAAAQLL 652
            ...|..|.....|.|....:......|...|        |....|:        |..|....:.:
 Frog   336 STTGSFGDHGSSHKNGSVQLSSNNRYGYQNG--------ASYTWQF--------EACKSQILKCM 384

  Fly   653 AKNKSPELVEQ------------KNGGSAKAAGASSVLS--AIEQMFTTSFDTPPRHASLPASSP 703
            ....|.:.::|            |...||...|...||.  |:|:|           .||..|||
 Frog   385 ECGSSHDTLQQLTTHMMVTGHFLKVTNSASKKGKQLVLDPLAVEKM-----------QSLSESSP 438

  Fly   704 SNSSTKNTSPVASSILKRLGIDETVDYNKPLIDTNDPYYQHYRYTSSERSGSECSAEARPRLDAP 768
                  |.||                 :||.  ||.|            |||     :.|.|.|.
 Frog   439 ------NDSP-----------------SKPF--TNSP------------SGS-----STPELKAC 461

  Fly   769 TPEKQQQ-GGGHDEESSKPAIKQEREAESKPVKMEIKSEFVDEPNEAEETSKMEAAVVNGSATNN 832
            ...:... ..|:.||.|:.: ::..:|..||:...:|.:::.| .:.::.|| |...:..|..|.
 Frog   462 KESRSDNLEDGNKEEKSETS-EEPEDAVEKPLDPTLKYQYLRE-EDLDDGSK-EGGDILKSLENT 523

  Fly   833 NNNIVERSSPKTPSSAASPQ------------------TRLLPPRSPAESQ-RSVTPKSPASSH 877
            ..:.:.::...|||.:|.|.                  |:::..|:...:: |.:.|||.:.||
 Frog   524 VTSAINKAQNGTPSWSAYPSIHAAYQITDVIKPSVSLGTQVMQMRNTFSNKFRPIAPKSKSVSH 587

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
tshNP_523615.2 zf-C2H2_2 <354..>382 CDD:289522 0/27 (0%)
C2H2 Zn finger 356..378 CDD:275371 0/21 (0%)
C2H2 Zn finger 468..490 CDD:275371 9/21 (43%)
C2H2 Zn finger 535..557 CDD:275371 11/21 (52%)
tshz2XP_002935441.3 homeodomain 833..901 CDD:238039
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - mtm9401
Panther 1 1.100 - - O PTHR12487
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R4785
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
44.130

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