DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment step and GN

DIOPT Version :10

Sequence 1:NP_001036375.2 Gene:step / 35425 FlyBaseID:FBgn0086779 Length:727 Species:Drosophila melanogaster
Sequence 2:NP_172851.1 Gene:GN / 837958 AraportID:AT1G13980 Length:1451 Species:Arabidopsis thaliana


Alignment Length:240 Identity:98/240 - (40%)
Similarity:126/240 - (52%) Gaps:31/240 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly   397 KQMSIGRKKFNMDPKKGIEYLVENRLL--RHDPQDVAHFLYKGEGLNKTAIGDYLGEKNDFNEDV 459
            :::.||...||.|||||:|:|....||  :.|||.||.|.....||:|..:||:||..::|...|
plant   563 RRLMIGADHFNRDPKKGLEFLQGTHLLPDKLDPQSVACFFRYTAGLDKNLVGDFLGNHDEFCVQV 627

  Fly   460 LKAFVALHDFTNLILVQALRQFLWSFRLPGEAQKIDRMMETFAQRYCQLNPDIFTNTDTCYVLSF 524
            |..|....||..:.|..|||.||.:||||||:|||.|::|.|::||...:|:|..|.|...|||:
plant   628 LNEFAGTFDFQYMNLDTALRLFLETFRLPGESQKIQRVLEAFSERYYMQSPEILANKDAALVLSY 692

  Fly   525 AIIMLNTSLHNPSVKDKPTVDQFISMNRGINNGGDLPRGLLESLYESIRTEPFKIPQDDGN---- 585
            :||||||..||..||.|.|.:.||..||.||.|.||||..|..|:.||.....:...:.|.    
plant   693 SIIMLNTDQHNVQVKKKMTEEDFIRNNRHINGGNDLPREFLSELFHSICNNEIRTTPEQGAGFPE 757

  Fly   586 -------DLMHTFFNPDKEGWLWKQGGRYKSWKRRWFILNDNCLY 623
                   ||||                  ||.|...:||.|:..|
plant   758 MTPSRWIDLMH------------------KSKKTAPYILADSRAY 784

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
stepNP_001036375.2 Sec7 395..577 CDD:460178 86/181 (48%)
PH_GRP1-like 592..710 CDD:269954 7/32 (22%)
GNNP_172851.1 PLN03076 <351..>1301 CDD:215560 98/240 (41%)
Sec7 562..745 CDD:460178 86/181 (48%)

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