DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment step and Psd2

DIOPT Version :9

Sequence 1:NP_001036375.2 Gene:step / 35425 FlyBaseID:FBgn0086779 Length:727 Species:Drosophila melanogaster
Sequence 2:XP_036017188.1 Gene:Psd2 / 74002 MGIID:1921252 Length:771 Species:Mus musculus


Alignment Length:628 Identity:145/628 - (23%)
Similarity:240/628 - (38%) Gaps:173/628 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly   172 PDSPPP--ASPTLSTQTVNCSDVT-------TKVTEVQRLPCDEPNTELISKRTEYKH------T 221
            |.||.|  ..|.|........||.       .|:.|          :||: :.|:|..      .
Mouse   108 PGSPCPDAGDPQLGLDCPGEPDVRDGFSATFEKILE----------SELL-RGTQYSSLDSLDVL 161

  Fly   222 TITTTTRTLI-VSRPVELLLNENGEIIARRSPRKSRSNSLGRMLDVQNEIG-TGGLFMEADPCSK 284
            ::|..:.:.: ...|:..|:.:.    ||.||........|.| ..:.::| |||...|.....:
Mouse   162 SLTDESDSCVSFEAPLTPLIQQR----ARDSPEAGAGLGNGDM-GPEGDLGATGGCDGELGSPLR 221

  Fly   285 NSLPPPPYIDDMRFIDDSSNSQSESERN--------SNIHKTNKYTSKNNNNDSKRESQQSNLCE 341
            .|:               |:|:||:..:        :..|:.....|..::.|.:          
Mouse   222 RSI---------------SSSRSENVLSHLSLTSVPNGFHEDGPGGSGGDDEDDE---------- 261

  Fly   342 SCRMLLDRNYINTEQSDNLVILRRPSKQIKDELCEVVSEMEALDVPEDCKHSNKDKQMSIGRKKF 406
                  |.:.:....||.         .:||.|.:..||:.:                |.|.:..
Mouse   262 ------DTDKLLNSASDT---------SLKDGLSDSDSELSS----------------SEGLEPG 295

  Fly   407 NMDP-KKGIEYLVE--NRLLRHDPQDVAHFLYKGEGLNKTAIGDYLGEKNDFNEDVLKAFVALHD 468
            :.|| ..|.:.:.|  .||.|.        ||..||..:..:...||:.|:|:..|...:::..|
Mouse   296 STDPLANGCQGVSEAARRLARR--------LYHLEGFQRCDVARQLGKNNEFSRLVAGEYLSFFD 352

  Fly   469 FTNLILVQALRQFLWSFRLPGEAQKIDRMMETFAQRYCQLNPDIFTNTDTCYVLSFAIIMLNTSL 533
            |:.|.|.:|||.||.:|.|.||.|:.:|::..|::||||.|||..|:.|..:.|:.|:::|||.|
Mouse   353 FSGLTLDRALRTFLKAFPLMGETQERERVLTHFSRRYCQCNPDDSTSEDGIHTLTCALMLLNTDL 417

  Fly   534 H-NPSVKDKPTVDQFISMNRGINNGGDLPRGLLESLYESIRTEPFKIPQDDG------NDLMHTF 591
            | :.::..|.:..|||:....:|:|.|..:.||::||.||:.|..:...|:.      ::|:...
Mouse   418 HGHVNIGKKMSCQQFIANLDQLNDGQDFAKDLLKTLYNSIKNEKLEWAIDEDELRKSLSELVDDK 482

  Fly   592 F--------------NP------------------------DKEGWLWKQGGRYKSWKRRWFILN 618
            |              ||                        |.:|....:|.|  .||:.:.:|.
Mouse   483 FGTGTKKVTRILDGGNPFLDVPQALNATTYKHGVLTRKTHADMDGKRTPRGRR--GWKKFYAVLK 545

  Fly   619 DNCLYY--FEYTTDKEPRGIIPLENISVREIHDRSKPHCFELFATGGADIIKACKTDSEGKVVEG 681
            ...||.  .||..||.         :|..::.:..:.|  ...||..:|.   .|..:..|:...
Mouse   546 GTILYLQKDEYRLDKA---------LSEGDLKNAIRVH--HALATRASDY---SKKSNVLKLKTA 596

  Fly   682 KHTVYRMSAATEEDQQEWIKR--LTQSISHNPFYDILVQRKKK 722
            ...|:...|.::|:...||.|  |..:|...|.:...|...||
Mouse   597 DWRVFLFQAPSKEEMLSWILRINLVAAIFSAPAFPAAVSSMKK 639

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
stepNP_001036375.2 Sec7 397..577 CDD:279680 64/183 (35%)
PH_GRP1-like 592..710 CDD:269954 31/159 (19%)
PH 596..708 CDD:278594 26/115 (23%)
Psd2XP_036017188.1 Sec7 294..462 CDD:238100 62/175 (35%)
PH_EFA6 508..631 CDD:270107 29/138 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5307
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.810

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