DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment step and Pheta2

DIOPT Version :9

Sequence 1:NP_001036375.2 Gene:step / 35425 FlyBaseID:FBgn0086779 Length:727 Species:Drosophila melanogaster
Sequence 2:NP_001123983.1 Gene:Pheta2 / 688685 RGDID:1586415 Length:259 Species:Rattus norvegicus


Alignment Length:118 Identity:28/118 - (23%)
Similarity:50/118 - (42%) Gaps:23/118 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly   595 DKEGWLWKQGGRYK------SWKRRWFILNDNCLYYFEYTTDKEPRGIIPLENISVREIHDRSKP 653
            |..|:|...||...      :.:|.||:|..|.|:.||....:.|..::.||..:| |:.:...|
  Rat    19 DHTGFLRSWGGPGSPPTPSGTGRRYWFVLKGNLLFSFESRESRVPLSLVVLEGCTV-ELAEAPVP 82

  Fly   654 HCFELFATGGADIIKACKTDSEGKVVEGKHTVYRMSAATEEDQQEWIKRLTQS 706
            ..|..          |.:.|:.|.      ..:.::|..:..|:.|:|.|:::
  Rat    83 EEFAF----------AIRFDAPGV------RPHLLAADGQAAQEAWVKALSRA 119

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
stepNP_001036375.2 Sec7 397..577 CDD:279680
PH_GRP1-like 592..710 CDD:269954 28/118 (24%)
PH 596..708 CDD:278594 27/117 (23%)
Pheta2NP_001123983.1 PH-like 11..138 CDD:302622 28/118 (24%)
PH 20..120 CDD:278594 27/117 (23%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

Return to query results.
Submit another query.