DRSC/TRiP Functional Genomics Resources

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Protein Alignment step and Iqsec2

DIOPT Version :10

Sequence 1:NP_001036375.2 Gene:step / 35425 FlyBaseID:FBgn0086779 Length:727 Species:Drosophila melanogaster
Sequence 2:NP_001264354.2 Gene:Iqsec2 / 685244 RGDID:1596452 Length:1488 Species:Rattus norvegicus


Alignment Length:635 Identity:160/635 - (25%)
Similarity:239/635 - (37%) Gaps:198/635 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly    66 FQSESPESRRSNSTFYVNTQNVSSAVFKDNRQPLLER--------GSGSDSSPSSVC-------- 114
            |..|..|..::.:.|.....::........|...|||        |.|.|...|||.        
  Rat   392 FSFEEYEKAQNPAYFEGKPASLDEGAMAGARSHRLERGLPYGGSCGGGIDGGGSSVTTSGEFSND 456

  Fly   115 -----------VRCSCNSITK------SGDRNETP----------------TMATPKSDIKIALK 146
                       |:....||.:      ||..:|.|                :.||..||:.:.|.
  Rat   457 ITELEDSFSKQVKSLAESIDEALNCHPSGPMSEEPGSAQLEKRESKEQQEDSSATSFSDLPLYLD 521

  Fly   147 PPPKPRSPSMAPYTSVATYNITKL-APDSPPPASPTLSTQT----------------VNCSDVTT 194
            .|..|.||...|.|........:. ||...||..|.:...|                :.|.|...
  Rat   522 DPVPPPSPERLPSTEPPPQGRPEFWAPAPLPPVPPPMPPGTREDGSREEGTRRGPGCLECRDFRL 586

  Fly   195 KVTEVQRLPCDEPNTELISKRTEYKHTTITTTTRTLIVSRPVELLLNENGEIIARRSPRKSRSNS 259
            :...:..|..:.|:...:.                                 ::.||.|.|    
  Rat   587 RAAHLPLLTIEPPSDSSVD---------------------------------LSDRSDRGS---- 614

  Fly   260 LGRMLDVQNEIGTGGLFMEADPCSKNS-------------------------------LPPPPY- 292
                  |..:     |..|||.||.:.                               |||.|. 
  Rat   615 ------VHRQ-----LVYEADGCSPHGTLKHKGPPGRAPIPHRHYPAPEGPAPAPPGPLPPAPNS 668

  Fly   293 ------IDDMRFI-------DDSSNSQSES-ERNSNIHKTNKYTSKNNNNDSKRESQQSNLCESC 343
                  :...|.:       ::|....:|| |.:||.::|...:|.:::.||.||...:.||:..
  Rat   669 GTGPSGVAGGRRLGKCEAAGENSDGGDNESLESSSNSNETINCSSGSSSRDSLREPPATGLCKQT 733

  Fly   344 RMLLDRNYINTEQSDNLVILRRPSKQIKDELCEVVSEMEALDVPEDCKHSNKDKQMSIGRKKFNM 408
            .....|:..::...:|.|:.||                                ...||...||.
  Rat   734 YQRETRHSWDSPAFNNDVVQRR--------------------------------HYRIGLNLFNK 766

  Fly   409 DPKKGIEYLVENRLLRHDPQDVAHFLYKGEGLNKTAIGDYLGEK-NDFNEDVLKAFVALHDFTNL 472
            .|:|||:||:|...|...|..||||:.:.:||::..||::||.: ..||.|||...|...||:::
  Rat   767 KPEKGIQYLIERGFLSDTPVGVAHFILERKGLSRQMIGEFLGNRQKQFNRDVLDCVVDEMDFSSM 831

  Fly   473 ILVQALRQFLWSFRLPGEAQKIDRMMETFAQRYCQLNPDI---FTNTDTCYVLSFAIIMLNTSLH 534
            .|..|||:|....|:.|||||::|::|.|:||||..||.:   |.|.||.::|:||||:|||.::
  Rat   832 DLDDALRKFQSHIRVQGEAQKVERLIEAFSQRYCVCNPALVRQFRNPDTIFILAFAIILLNTDMY 896

  Fly   535 NPSVK--DKPTVDQFISMNRGINNGGDLPRGLLESLYESIRTEPFKIPQD 582
            :||||  .|..:|.||...||::||.|:||.||..:|:.|:....:...|
  Rat   897 SPSVKAERKMKLDDFIKNLRGVDNGEDIPRDLLVGIYQRIQGRELRTNDD 946

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
stepNP_001036375.2 Sec7 395..577 CDD:460178 82/187 (44%)
PH_GRP1-like 592..710 CDD:269954
Iqsec2NP_001264354.2 GAS 26..>146 CDD:464001
Sec7 753..941 CDD:460178 84/219 (38%)
IQ_SEC7_PH 963..1092 CDD:465120
KLF1_2_4_N <1318..1425 CDD:425360
Blue background indicates that the domain is not in the aligned region.

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