DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment step and Iqsec2

DIOPT Version :9

Sequence 1:NP_001036375.2 Gene:step / 35425 FlyBaseID:FBgn0086779 Length:727 Species:Drosophila melanogaster
Sequence 2:XP_038956003.1 Gene:Iqsec2 / 685244 RGDID:1596452 Length:1520 Species:Rattus norvegicus


Alignment Length:635 Identity:160/635 - (25%)
Similarity:239/635 - (37%) Gaps:198/635 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly    66 FQSESPESRRSNSTFYVNTQNVSSAVFKDNRQPLLER--------GSGSDSSPSSVC-------- 114
            |..|..|..::.:.|.....::........|...|||        |.|.|...|||.        
  Rat   424 FSFEEYEKAQNPAYFEGKPASLDEGAMAGARSHRLERGLPYGGSCGGGIDGGGSSVTTSGEFSND 488

  Fly   115 -----------VRCSCNSITK------SGDRNETP----------------TMATPKSDIKIALK 146
                       |:....||.:      ||..:|.|                :.||..||:.:.|.
  Rat   489 ITELEDSFSKQVKSLAESIDEALNCHPSGPMSEEPGSAQLEKRESKEQQEDSSATSFSDLPLYLD 553

  Fly   147 PPPKPRSPSMAPYTSVATYNITKL-APDSPPPASPTLSTQT----------------VNCSDVTT 194
            .|..|.||...|.|........:. ||...||..|.:...|                :.|.|...
  Rat   554 DPVPPPSPERLPSTEPPPQGRPEFWAPAPLPPVPPPMPPGTREDGSREEGTRRGPGCLECRDFRL 618

  Fly   195 KVTEVQRLPCDEPNTELISKRTEYKHTTITTTTRTLIVSRPVELLLNENGEIIARRSPRKSRSNS 259
            :...:..|..:.|:...:.                                 ::.||.|.|    
  Rat   619 RAAHLPLLTIEPPSDSSVD---------------------------------LSDRSDRGS---- 646

  Fly   260 LGRMLDVQNEIGTGGLFMEADPCSKNS-------------------------------LPPPPY- 292
                  |..:     |..|||.||.:.                               |||.|. 
  Rat   647 ------VHRQ-----LVYEADGCSPHGTLKHKGPPGRAPIPHRHYPAPEGPAPAPPGPLPPAPNS 700

  Fly   293 ------IDDMRFI-------DDSSNSQSES-ERNSNIHKTNKYTSKNNNNDSKRESQQSNLCESC 343
                  :...|.:       ::|....:|| |.:||.::|...:|.:::.||.||...:.||:..
  Rat   701 GTGPSGVAGGRRLGKCEAAGENSDGGDNESLESSSNSNETINCSSGSSSRDSLREPPATGLCKQT 765

  Fly   344 RMLLDRNYINTEQSDNLVILRRPSKQIKDELCEVVSEMEALDVPEDCKHSNKDKQMSIGRKKFNM 408
            .....|:..::...:|.|:.||                                ...||...||.
  Rat   766 YQRETRHSWDSPAFNNDVVQRR--------------------------------HYRIGLNLFNK 798

  Fly   409 DPKKGIEYLVENRLLRHDPQDVAHFLYKGEGLNKTAIGDYLGEK-NDFNEDVLKAFVALHDFTNL 472
            .|:|||:||:|...|...|..||||:.:.:||::..||::||.: ..||.|||...|...||:::
  Rat   799 KPEKGIQYLIERGFLSDTPVGVAHFILERKGLSRQMIGEFLGNRQKQFNRDVLDCVVDEMDFSSM 863

  Fly   473 ILVQALRQFLWSFRLPGEAQKIDRMMETFAQRYCQLNPDI---FTNTDTCYVLSFAIIMLNTSLH 534
            .|..|||:|....|:.|||||::|::|.|:||||..||.:   |.|.||.::|:||||:|||.::
  Rat   864 DLDDALRKFQSHIRVQGEAQKVERLIEAFSQRYCVCNPALVRQFRNPDTIFILAFAIILLNTDMY 928

  Fly   535 NPSVK--DKPTVDQFISMNRGINNGGDLPRGLLESLYESIRTEPFKIPQD 582
            :||||  .|..:|.||...||::||.|:||.||..:|:.|:....:...|
  Rat   929 SPSVKAERKMKLDDFIKNLRGVDNGEDIPRDLLVGIYQRIQGRELRTNDD 978

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
stepNP_001036375.2 Sec7 397..577 CDD:279680 82/185 (44%)
PH_GRP1-like 592..710 CDD:269954
PH 596..708 CDD:278594
Iqsec2XP_038956003.1 GAS 26..>146 CDD:404693
Sec7 785..973 CDD:396096 84/219 (38%)
IQ_SEC7_PH 993..1130 CDD:406773
KLF1_2_4_N <1350..1457 CDD:425360
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
21.910

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