DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment step and psda

DIOPT Version :9

Sequence 1:NP_001036375.2 Gene:step / 35425 FlyBaseID:FBgn0086779 Length:727 Species:Drosophila melanogaster
Sequence 2:XP_009305653.1 Gene:psda / 570918 ZFINID:ZDB-GENE-090313-44 Length:1611 Species:Danio rerio


Alignment Length:902 Identity:187/902 - (20%)
Similarity:325/902 - (36%) Gaps:277/902 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 HQKRPSISNWFSSLRRQPKNKKCSPGLGGSESVGRKQPLQRSCLDLSTTRVGCDG-CVSLEFFQS 68
            :|||.|::...|     |.| .|...:..||..|..:..:......|.:..|..| .|.....:.
Zfish   655 NQKRNSLNTPGS-----PDN-HCGVSVPHSEIKGHNRAKKEWSGTASQSSSGVKGSLVESTLHEK 713

  Fly    69 ESPESRRSNSTFYVNTQNVSSAVFKDN----RQPLLER------------GSGSD-------SSP 110
            :...|..|:.|...::.:.::|:..:|    ::|.|..            ||.|:       |:|
Zfish   714 KHISSETSSRTSQKSSDSGNTAIQSENATCLQRPSLHSQKIARAKWEFLFGSHSEDQQTKDSSTP 778

  Fly   111 SSVCVRCSCNSITKSGDRNETPTMATPKSDIKIALKPPPKPRSPSMAPYTSVATYNITKLAPDSP 175
            ||            ||..:|:||              |..|.|..:.|.|:.:.:          
Zfish   779 SS------------SGCSSESPT--------------PIPPLSTHLRPVTTHSRH---------- 807

  Fly   176 PPASPTLSTQTVNCSDVTTKVTEVQRLPCDEPNTELISKRTEYKHTTITTTTRTLIVSRPV---- 236
               ..::.:...:|.||            .:...||||     .|.|:.|:.:|.|:.|.|    
Zfish   808 ---YKSIGSSKSSCQDV------------QQVEVELIS-----HHPTVGTSNKTGIIRRTVKYSE 852

  Fly   237 -----------------ELLLNENGEIIARRSPRKS--------RSNSLGRML--------DVQN 268
                             |::|.|..|:.:.....:|        .|:.|..:|        ::|:
Zfish   853 TDIDAVPLRCYRETDLDEVMLAEQEEVDSAFGSNRSVLGTSGTTSSSPLDGVLCPHTDGEEELQD 917

  Fly   269 E--IGTGGLFMEADPCSKNSLP------------PPPYIDD--------------MRFIDDSSNS 305
            |  .....:.|:.|...:|:.|            |..|..|              .|...|..::
Zfish   918 EEVASWASVRMQGDKKRQNATPEGDEVFSRLLRGPLDYQPDSHTDLKSPISVTSPCRVSSDCLDT 982

  Fly   306 QS---ESERNSNIHKTNKYTSKNNNN-------------DSKRESQQSNLCESCRMLLDRNYINT 354
            .|   ||...|:..|...|:|.::.:             .:.....||.:|||.:.:.:.|:.:.
Zfish   983 FSRHFESIMESHRAKGTSYSSLDSEDITPSGPPIFTFDFPTLTPEIQSQICESAKQITELNFASL 1047

  Fly   355 EQSD-----NLVILRRP-SKQIKDELCE------VVSEMEALDVPEDCKHSNKDKQMSIGRKKFN 407
            ...:     :|::..:. .::.:..:||      ..|..|....|:....:.|.::.|  |....
Zfish  1048 TCPEPPTVSHLIVASQDLHREDRSSVCEEDGLFCTGSHSEQTHRPDSDSDATKRERPS--RPVSE 1110

  Fly   408 MDPKKGIEYLVENRLLRHDPQDVAH--------------FLYKGEGLNKTAIGDYLGEKNDFNED 458
            .||:      |..||.....:.:|:              .||..:|..|:.:..:|.:.|:|:..
Zfish  1111 SDPE------VAERLALGSTETLANGNKADLQAAKRLAKRLYTLDGFKKSDVARHLSKNNEFSHM 1169

  Fly   459 VLKAFVALHDFTNLILVQALRQFLWSFRLPGEAQKIDRMMETFAQRYCQLNPDIFTNTDTCYVLS 523
            |.:.:::..:|:.:::.||||.||..|.|.||.|:.:|::..|::||.|.||......|:.:.|:
Zfish  1170 VAEEYLSHFNFSGMMVDQALRVFLKEFALMGETQERERVLSHFSKRYLQCNPKTIPYEDSVHTLT 1234

  Fly   524 FAIIMLNTSLHNPSVKDKPTVDQFISMNRGINNGGDLPRGLLESLYESIRTEPFKIPQDD----- 583
            .|:::|||.||..:|..:.:..|||...:|:|:|.|.|:.||::||.||:.|..:...|:     
Zfish  1235 CALMLLNTDLHGHNVGKRMSCMQFIGNLQGLNDGQDFPKDLLKALYNSIKNEKLQWTIDEEELRK 1299

  Fly   584 ----------------------GNDLMHTF----------------FNPDKEGWLWKQGGRYKSW 610
                                  ||.|:...                .:.|.:|....:|.|  .|
Zfish  1300 SFSEMDGRKDSASHTMKRISSGGNSLISVAQQSSAQVYKNGFLVRKVHADPDGKKTPRGKR--GW 1362

  Fly   611 KRRWFILNDNCLYY--FEYTTDKE------PRGIIPLENISVREIHDRSKPHCFELFATGGADII 667
            |..:.||....||.  .||..||:      ...:....::::|......:|:.|.|..   ||  
Zfish  1363 KTFYAILKGLILYLQKDEYRPDKQLSDEDLKNAVSIHHSLAMRAADYSKRPNVFYLRT---AD-- 1422

  Fly   668 KACKTDSEGKVVEGKHTVYRMSAATEEDQQEWIKRL---TQSISHNPFYDILVQRKK 721
                           ..|:...|...|..|.||.|:   ....|..||...:..:||
Zfish  1423 ---------------WRVFLFQAPNAEQMQSWITRINTVAAMFSAPPFPAAIGSQKK 1464

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
stepNP_001036375.2 Sec7 397..577 CDD:279680 59/193 (31%)
PH_GRP1-like 592..710 CDD:269954 28/128 (22%)
PH 596..708 CDD:278594 26/122 (21%)
psdaXP_009305653.1 Sec7 1136..1288 CDD:238100 51/151 (34%)
PH_EFA6 1332..1456 CDD:270107 29/145 (20%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5307
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.810

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