DRSC/TRiP Functional Genomics Resources

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Protein Alignment step and plekha6

DIOPT Version :9

Sequence 1:NP_001036375.2 Gene:step / 35425 FlyBaseID:FBgn0086779 Length:727 Species:Drosophila melanogaster
Sequence 2:XP_021335504.1 Gene:plekha6 / 568764 ZFINID:ZDB-GENE-140106-14 Length:1230 Species:Danio rerio


Alignment Length:140 Identity:34/140 - (24%)
Similarity:67/140 - (47%) Gaps:37/140 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   593 NPD----KEGWLWKQGGR-YKSWKRRWFILNDNCLYYFEYTTDKEPRGIIPLENISVREIHDR-- 650
            ||:    ::|||:||... .|.|.:|||:|.|.||:|::...::...|.:||.:..:..:...  
Zfish   131 NPNAEVSRQGWLYKQASSGVKQWNKRWFVLTDRCLFYYKDEKEEGVLGSLPLLSFKIGPVQTSDS 195

  Fly   651 -SKPHCFELFATGGADIIKACKTDSEGKVVE------------------GKHTVYRMSAATEEDQ 696
             ::...|:::          |:|:.|.:..|                  |..|.| .||.::::|
Zfish   196 ITRKFAFKVW----------CETEEEEEEEEESEDLKGSIAFCLQVEHAGTRTYY-FSADSQKEQ 249

  Fly   697 QEWIKRLTQS 706
            :|||:.::::
Zfish   250 EEWIQAMSEA 259

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
stepNP_001036375.2 Sec7 397..577 CDD:279680
PH_GRP1-like 592..710 CDD:269954 34/140 (24%)
PH 596..708 CDD:278594 32/133 (24%)
plekha6XP_021335504.1 PH_PEPP1_2_3 130..260 CDD:270068 34/140 (24%)
SMC_N <622..>775 CDD:330553
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

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