DRSC/TRiP Functional Genomics Resources

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Protein Alignment step and farp2

DIOPT Version :9

Sequence 1:NP_001036375.2 Gene:step / 35425 FlyBaseID:FBgn0086779 Length:727 Species:Drosophila melanogaster
Sequence 2:XP_009300696.1 Gene:farp2 / 567490 ZFINID:ZDB-GENE-030131-2993 Length:1051 Species:Danio rerio


Alignment Length:644 Identity:117/644 - (18%)
Similarity:211/644 - (32%) Gaps:222/644 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly   158 PY---TSVATYNITKLAPDSP--------------PPASPTLSTQTVNCSDVTTKVTEVQRLPCD 205
            ||   .|....:...||.|.|              ||:|.|.|.|:::...|:.:        .:
Zfish   371 PYQRRNSKIRMSTRSLASDVPKQNLSFNDSLRTHIPPSSITASFQSLHAPSVSMR--------AE 427

  Fly   206 EPNTELISKRTEY---------KHTTITTTTR-------TLIVSRPVELLLNENGEIIARRSPRK 254
            .||..|...:|::         |...|.|.::       ::.:..|.....|:.|.:....|.:.
Zfish   428 TPNQLLHLHQTQHQPLRAPSPMKQDPIKTNSQSTYAFPDSIAIDSPQLSPFNDKGPLCLSPSFQM 492

  Fly   255 SRSNSLGR-----MLDVQNEIGTGGLFMEADPCSKNSLPPPPYIDDMRFIDDSSNSQSESERNSN 314
            |..:..|:     ...:.||:||..|                                       
Zfish   493 STLSLPGQAPSPLQSPILNEVGTARL--------------------------------------- 518

  Fly   315 IHKTNKYTSKNNNNDSKRESQQSNLCESCRMLLDRNYINTEQSDNLVILRRPSKQIKDELCEVVS 379
                          |...|.::.      |...|:.|...::     ||......:||  .||::
Zfish   519 --------------DEDEEGRRK------RYPTDKAYFIAKE-----ILTTERTYLKD--LEVIT 556

  Fly   380 EMEALDVPEDCKHSNKDKQMSIGRKKF---NMDP----KKGIEYLVENRLLRHDPQDVAHFLYKG 437
            ......|       .|:..|..|....   |:||    .:|....::.||...:.:..||  .||
Zfish   557 VWFRSAV-------IKENAMPEGLMTLLFSNIDPIYEFHRGFLKEIDQRLALWEGRSNAH--VKG 612

  Fly   438 EGLNKTAIGDYLGEKNDFNEDVLKAFVALHDFTNLI---------LVQALRQFLWSFRLPGEAQK 493
            :   ...|||.:          |:...:|.:||..:         |.:|.::          .:|
Zfish   613 D---YQRIGDVM----------LRNMCSLKEFTGYLQKHDEVLTELEKATKR----------VKK 654

  Fly   494 IDRMMETF-AQRYCQLNPDIFTNTDTCYVLSFAIIMLNTSLH-NPSVKDKPTVDQFISMNRGINN 556
            ::.:.:.| .|:.|.|..:.|.......::.:.:|:.....| :|..:|      :......:..
Zfish   655 LETVYKEFELQKVCYLPLNTFLLKPIQRLMHYKLILERLCKHYSPQHRD------YDDCKEALKE 713

  Fly   557 GGDLPRGLLESLYESIRTEPFKIPQDDGNDL--MHTFFNPDKEGWLWKQGGRYKSWK-----RRW 614
            ..::...|..||   ||.|.|:...:...||  :.....|.:|  ..::|..||..|     |.:
Zfish   714 VAEIATQLQSSL---IRLENFQKLTELQRDLIGIENLTAPGRE--FIREGCLYKLTKKGLQQRMF 773

  Fly   615 FILNDNCLYYFE---YTTDKEPRGIIPLENI-------SVREIHDR-SKPHCFELFATGGADIIK 668
            |:.:|..||..:   .|...:..|.:||..:       .|.|..:. |.||||.:::        
Zfish   774 FLFSDMLLYTSKGVTATNQFKVHGQLPLHGMILIVLDAPVEESENEWSVPHCFTIYS-------- 830

  Fly   669 ACKTDSEGKVVEGKHTVYRMSAATEEDQQEWIKRLTQSISHNPFYDILVQRKKKALSKS 727
                        .:.|:. ::|:::.:..:||:.|..:|          :..||...||
Zfish   831 ------------AQRTIV-VAASSKVEMNKWIEDLNMAI----------EMSKKCQEKS 866

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
stepNP_001036375.2 Sec7 397..577 CDD:279680 37/197 (19%)
PH_GRP1-like 592..710 CDD:269954 28/133 (21%)
PH 596..708 CDD:278594 26/127 (20%)
farp2XP_009300696.1 B41 53..241 CDD:214604
FERM_N 55..118 CDD:286467
FERM_M 138..241 CDD:278785
FERM_C_FARP1-like 228..348 CDD:270014
FA 341..382 CDD:285894 3/10 (30%)
RhoGEF 537..720 CDD:279015 39/227 (17%)
PH1_FARP1-like 747..861 CDD:269928 28/146 (19%)
PH 755..857 CDD:278594 26/132 (20%)
PH2_FARP1-like 933..1030 CDD:270055
PH 938..1031 CDD:278594
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

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