DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment step and psd3l

DIOPT Version :9

Sequence 1:NP_001036375.2 Gene:step / 35425 FlyBaseID:FBgn0086779 Length:727 Species:Drosophila melanogaster
Sequence 2:XP_021334922.1 Gene:psd3l / 559329 ZFINID:ZDB-GENE-030131-8195 Length:1135 Species:Danio rerio


Alignment Length:840 Identity:182/840 - (21%)
Similarity:303/840 - (36%) Gaps:285/840 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly    86 NVSSAVFKDNRQPLLERGSGSDSSPSSVCVRCSCNSITKSGDRNETPT---MATPKSDI------ 141
            |:.|.:...::....|:||.|..:.:|..:.|       :|.....|:   ||....|:      
Zfish   249 NLLSGLTARSQHAATEQGSLSGDATASPMIPC-------NGQNQTLPSQLEMANQGLDLQNGQSE 306

  Fly   142 -----------------KIALKPPPKPRSPSMAPYTSVATYNITKLAPD----SPPPASPTLSTQ 185
                             :..:|.|    |..||....::.:: |..|||    ||.||...:   
Zfish   307 LTGDSLLTSGLLFDSWCEALIKDP----SSVMAAANELSCFS-TGNAPDKLDASPTPAGAHV--- 363

  Fly   186 TVNCSDVTTKVTEVQRLPCDEPNTELIS-----KRTEYKHTTITTTTRTLIVSRP----VELLLN 241
                                ||:.|::|     |.||.|.|...:..||   ..|    |:..|.
Zfish   364 --------------------EPSGEVLSQENSGKETEGKRTGSPSPIRT---DEPSAEIVDESLE 405

  Fly   242 ENGEIIAR----------------RSPRK-----SRSNSLGRMLDVQNEIGTGGLFMEADPCSKN 285
            |:.:|:|.                :.|:|     ||:.||     |..|:..|    ....||  
Zfish   406 ESNKILAEVPGIFSGFLEGGKLRDKPPKKLRFVESRAESL-----VNGEMQNG----SHQSCS-- 459

  Fly   286 SLPPPPYIDDMRFIDDSSNSQSESERNSNIHKTNKYTSKNNNNDSKRES-------------QQS 337
                   :.:....|..|.:.:...:.|.:....|.|....:..|..:|             |..
Zfish   460 -------VKEEVTQDIQSTAAAGVPQGSVLRPEQKPTENGTDRCSAGKSAAGEIDTTDVFSCQFE 517

  Fly   338 NLCESCRMLLDRNYINTEQSDNLVILRRP------------------------SKQIKD------ 372
            |:.||.|:   |..:.:.. |:|..|..|                        .:::||      
Zfish   518 NILESERL---RGTLYSSM-DSLDALSNPVPEPTPQSTLEPSFAFDIPLTPMIQQRLKDRSLFLE 578

  Fly   373 ----------ELCEVVSEME----ALDVPEDCKHSN-KDKQMSIGRKKFNMDPK---KG------ 413
                      |:..|.|..|    ||:|......:. ||...::.......|||   :|      
Zfish   579 PAAPDLSSDTEVLSVTSTKERGKTALEVTSSFLSAGCKDSCAALANGLNERDPKDWLQGCLSSDA 643

  Fly   414 ---------------IEYLVENRLLRHDPQD-------VAHFLYKGEGLNKTAIGDYLGEKNDFN 456
                           :|.|.:..:|.:..:.       :|..||..||..::.:..:||:.|||:
Zfish   644 GLKDVLSDWDSDMDVVECLKDTDVLHNGSRSDQEAARRLARRLYHLEGFRRSDVAKHLGKNNDFS 708

  Fly   457 EDVLKAFVALHDFTNLILVQALRQFLWSFRLPGEAQKIDRMMETFAQRYCQLNPDIFTNTDTCYV 521
            :.|.:.::...:||:..|.|:||.||.:|.|.||.|:.:|::..|:.||.|.||.|.|..|..:.
Zfish   709 KMVAEEYLTFFEFTDQTLDQSLRCFLKAFSLMGETQERERVLIHFSNRYYQCNPTIITAQDGVHC 773

  Fly   522 LSFAIIMLNTSLHNPSVKDKPTVDQFISMNRGINNGGDLPRGLLESLYESIRTEPFKIPQD---- 582
            |:.|:::|||.||.|::..|.|..:||:...|:|.|.|.||.||:|||.||:.|..:...|    
Zfish   774 LTCALMLLNTDLHGPNIGKKMTCQEFINNLDGLNGGQDFPRELLKSLYNSIKNEKLEWAVDGDEL 838

  Fly   583 --------DGNDLMH--------TFFNP------DKEGWLWKQG-----------------GRYK 608
                    |.|...|        :..||      |....::|.|                 |: :
Zfish   839 KKSLSELADKNHHSHSKSISRISSGSNPFLDIAHDPNAAVYKTGFLARKIHADMDGKKTPRGK-R 902

  Fly   609 SWKRRWFILNDNCLYY--FEYTTDK-----EPRGIIPLEN-ISVREIHDRSKPHCFELFATGGAD 665
            .||..:.:|....||.  .||..:|     :.:..|.:.: ::::.:....||:..:|       
Zfish   903 GWKTFYAVLKGMILYLQKDEYKPEKALSEDDLKNAISVHHALAIKAMDYEKKPNVLKL------- 960

  Fly   666 IIKACKTDSEGKVVEGKHTVYRMSAATEEDQQEWIKRLTQSIS---HNPFYDILVQRKKK 722
                       |..:.:  |:...|.:.|:.:.|| |:..|::   ..|.:...:..:||
Zfish   961 -----------KTADWR--VFLFQAQSPEEMESWI-RIINSVAAMFSAPSFPAAIGSQKK 1006

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
stepNP_001036375.2 Sec7 397..577 CDD:279680 67/210 (32%)
PH_GRP1-like 592..710 CDD:269954 26/151 (17%)
PH 596..708 CDD:278594 23/136 (17%)
psd3lXP_021334922.1 Sec7 675..829 CDD:238100 60/153 (39%)
PH_EFA6 873..998 CDD:270107 25/146 (17%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

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