DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment step and sec73

DIOPT Version :9

Sequence 1:NP_001036375.2 Gene:step / 35425 FlyBaseID:FBgn0086779 Length:727 Species:Drosophila melanogaster
Sequence 2:NP_001342851.1 Gene:sec73 / 3361502 PomBaseID:SPAC19A8.01c Length:1082 Species:Schizosaccharomyces pombe


Alignment Length:578 Identity:137/578 - (23%)
Similarity:223/578 - (38%) Gaps:135/578 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    68 SESPESRRSNSTFYVNTQNVS--SAVFKDNRQPLLE-------------RGSGSDSSPSSVCVRC 117
            |....|.:|.....||:.|.|  |:.||.:.|..|.             :.|||.:|.|    :.
pombe     7 SSQESSNKSEKDTTVNSPNASSFSSFFKKSSQTYLSKRSEKLNEHNSKLKSSGSFTSNS----QT 67

  Fly   118 SCNSITKSGDRNETPTMATPK----------SDIKIALKPPPKPRSPSMAPYTSVATYNITKLAP 172
            ..::...|..:|....:|..|          ||::.|..|        :|.|:|.:..|.:....
pombe    68 DLSNSPSSKKKNIFYPIARAKHSFYFNHNWSSDLQQANSP--------VASYSSQSVSNDSNFPK 124

  Fly   173 DSPPPASPTLSTQTVNCSDVTTKVTEVQRLPCDEPNTELISKRTEYK---------HTTITTTTR 228
            |...|.|..||....:.           :.|....:.:|.:.|:.::         :..:.:|| 
pombe   125 DVTSPISTDLSGSNPSL-----------KSPSSINSAKLRASRSFFRFPKWSRKSWNPDVNSTT- 177

  Fly   229 TLIVSRPVELLLNENGEIIARRSPRKSRSNSLGRMLD---VQNEIGTGGLFMEADPCSKN--SLP 288
                |.|.|:     |.:.....|...::.:|....|   :||  ||....::.....|.  |||
pombe   178 ----SSPSEV-----GSLDKAGGPLNQQNENLSAESDNTILQN--GTRKSSVKMSDLGKRIASLP 231

  Fly   289 ----PP-------PYIDDMRFIDDSSNSQSESERNSNIHKTNKYTSKNNNNDSKRESQQSNLCE- 341
                ||       .||..:...|.:||..|.|   |::.....|.|.:..||.::...||:... 
pombe   232 VVKRPPIQFSISSDYIKPVDKSDQTSNVPSPS---SSVGSLRLYRSPSIPNDVEQPQPQSSRSRP 293

  Fly   342 -----SCRMLLDRNYINTEQSDNLVILRRPSKQIKDELCEVVSEMEALDVPEDCKHSNKDKQMSI 401
                 ..:..|:|...|.....:...|||     .|:.| |...:|...:..|.|          
pombe   294 RSSTIPTQRTLERLRENRSSIFSFRTLRR-----DDDEC-VAQTIENSALFSDIK---------- 342

  Fly   402 GRKKFNMDPKKGIEYLVENRLLRHDPQDVAHFLYKGEGLNKTAIGDYLGEKNDFNEDVLKAFVAL 466
                  .:|.|.:..:.|   |..|....::.....|.:..:.:...|.||     |.:....||
pombe   343 ------PNPTKFLSSVPE---LTADDTAESYLSKLRETVPYSRMIPVLAEK-----DHVTLNKAL 393

  Fly   467 H------DFTNLILVQALRQFLWSFRLPGEAQKIDRMMETFAQRYCQLNPDIFTNTDTCYVLSFA 525
            |      :|.|..|...||.||....||.|.|:|||::..|::||.:.||.:|::.|.||:|.|:
pombe   394 HLCMSGMEFENRPLDFCLRLFLLKSHLPKETQQIDRVINAFSKRYFECNPGMFSSQDQCYILVFS 458

  Fly   526 IIMLNTSLHNPSVKDKPTVDQFISMNRGINNGGDLPRGLLESLYESIRTEPFKIPQDD 583
            ::||:|.:.|.:.|.|.|..:||:    :.:..:|...::|..|::|...|| :..||
pombe   459 LMMLHTDVFNSNNKHKMTKQEFIN----LCDIDELAPEIMEYYYDNITFTPF-VNLDD 511

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
stepNP_001036375.2 Sec7 397..577 CDD:279680 51/185 (28%)
PH_GRP1-like 592..710 CDD:269954
PH 596..708 CDD:278594
sec73NP_001342851.1 COG3942 5..>222 CDD:332523 50/249 (20%)
Sec7 <381..506 CDD:307500 45/133 (34%)
PH <710..767 CDD:214574
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5307
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000619
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR10663
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
33.000

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