DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment step and Iqsec2

DIOPT Version :9

Sequence 1:NP_001036375.2 Gene:step / 35425 FlyBaseID:FBgn0086779 Length:727 Species:Drosophila melanogaster
Sequence 2:XP_006528905.1 Gene:Iqsec2 / 245666 MGIID:3528396 Length:1520 Species:Mus musculus


Alignment Length:635 Identity:160/635 - (25%)
Similarity:239/635 - (37%) Gaps:198/635 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly    66 FQSESPESRRSNSTFYVNTQNVSSAVFKDNRQPLLER--------GSGSDSSPSSVC-------- 114
            |..|..|..::.:.|.....::........|...|||        |.|.|...|||.        
Mouse   424 FSFEEYEKAQNPAYFEGKPASLDEGAMAGARSHRLERGLPYGGSCGGGIDGGGSSVTTSGEFSND 488

  Fly   115 -----------VRCSCNSITK------SGDRNETP----------------TMATPKSDIKIALK 146
                       |:....||.:      ||..:|.|                :.||..||:.:.|.
Mouse   489 ITELEDSFSKQVKSLAESIDEALNCHPSGPMSEEPGSAQLEKRESKEQQEDSSATSFSDLPLYLD 553

  Fly   147 PPPKPRSPSMAPYTSVATYNITKL-APDSPPPASPTLSTQT----------------VNCSDVTT 194
            .|..|.||...|.|........:. ||...||..|.:...|                :.|.|...
Mouse   554 DPVPPPSPERLPSTEPPPQGRPEFWAPAPLPPVPPPMPPGTREDGSREEGTRRGPGCLECRDFRL 618

  Fly   195 KVTEVQRLPCDEPNTELISKRTEYKHTTITTTTRTLIVSRPVELLLNENGEIIARRSPRKSRSNS 259
            :...:..|..:.|:...:.                                 ::.||.|.|    
Mouse   619 RAAHLPLLTIEPPSDSSVD---------------------------------LSDRSDRGS---- 646

  Fly   260 LGRMLDVQNEIGTGGLFMEADPCSKNS-------------------------------LPPPPY- 292
                  |..:     |..|||.||.:.                               |||.|. 
Mouse   647 ------VHRQ-----LVYEADGCSPHGTLKHKGPPGRAPIPHRHYPAPEGPAPAPPGPLPPAPNS 700

  Fly   293 ------IDDMRFI-------DDSSNSQSES-ERNSNIHKTNKYTSKNNNNDSKRESQQSNLCESC 343
                  :...|.:       ::|....:|| |.:||.::|...:|.:::.||.||...:.||:..
Mouse   701 GTGPSGVAGGRRLGKCEAAGENSDGGDNESLESSSNSNETINCSSGSSSRDSLREPPATGLCKQT 765

  Fly   344 RMLLDRNYINTEQSDNLVILRRPSKQIKDELCEVVSEMEALDVPEDCKHSNKDKQMSIGRKKFNM 408
            .....|:..::...:|.|:.||                                ...||...||.
Mouse   766 YQRETRHSWDSPAFNNDVVQRR--------------------------------HYRIGLNLFNK 798

  Fly   409 DPKKGIEYLVENRLLRHDPQDVAHFLYKGEGLNKTAIGDYLGEK-NDFNEDVLKAFVALHDFTNL 472
            .|:|||:||:|...|...|..||||:.:.:||::..||::||.: ..||.|||...|...||:::
Mouse   799 KPEKGIQYLIERGFLSDTPVGVAHFILERKGLSRQMIGEFLGNRQKQFNRDVLDCVVDEMDFSSM 863

  Fly   473 ILVQALRQFLWSFRLPGEAQKIDRMMETFAQRYCQLNPDI---FTNTDTCYVLSFAIIMLNTSLH 534
            .|..|||:|....|:.|||||::|::|.|:||||..||.:   |.|.||.::|:||||:|||.::
Mouse   864 DLDDALRKFQSHIRVQGEAQKVERLIEAFSQRYCVCNPALVRQFRNPDTIFILAFAIILLNTDMY 928

  Fly   535 NPSVK--DKPTVDQFISMNRGINNGGDLPRGLLESLYESIRTEPFKIPQD 582
            :||||  .|..:|.||...||::||.|:||.||..:|:.|:....:...|
Mouse   929 SPSVKAERKMKLDDFIKNLRGVDNGEDIPRDLLVGIYQRIQGRELRTNDD 978

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
stepNP_001036375.2 Sec7 397..577 CDD:279680 82/185 (44%)
PH_GRP1-like 592..710 CDD:269954
PH 596..708 CDD:278594
Iqsec2XP_006528905.1 ATG16 <23..>64 CDD:370001
Sec7 785..973 CDD:366596 84/219 (38%)
IQ_SEC7_PH 993..1125 CDD:374551
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5307
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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