DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment step and Psd4

DIOPT Version :9

Sequence 1:NP_001036375.2 Gene:step / 35425 FlyBaseID:FBgn0086779 Length:727 Species:Drosophila melanogaster
Sequence 2:NP_001342160.1 Gene:Psd4 / 215632 MGIID:2674093 Length:1005 Species:Mus musculus


Alignment Length:772 Identity:166/772 - (21%)
Similarity:280/772 - (36%) Gaps:232/772 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly    43 LQRSCLDLSTTRVGCDGCVSLEFFQSESPESRRSNSTFYVNTQNVSSAVFKDN---RQPLLERGS 104
            |:..|.|.||     :|    |.|....|.|.....|::.:.|.:.|.:.|..   ||. .|...
Mouse   207 LESPCSDTST-----EG----ECFSWGYPNSHPDMKTWHQSPQTLDSPLQKGTGLWRQE-NELDL 261

  Fly   105 GSDSSPSSVCVRCSCNSITKSGDRNETPTMATPKSDIKIALK----------PPPK--------- 150
            |||::....|               .||....|...:...|.          ||.:         
Mouse   262 GSDTADHGGC---------------STPPFPVPSYKMHPCLALGSTEGDPTVPPDQEGETSCEDD 311

  Fly   151 -----PRSPSMAPYTSVATYNIT-KLAPDSPPPASPTLSTQTVNCSDVTTKVTE-VQRLPCDEPN 208
                 |::|.:.......:.|.. .|.|.:..|..|..|..:.:.||:|..:.| :||   ::| 
Mouse   312 LGHGSPKAPFVDHELIQESDNFEFDLRPATTHPVQPWGSQTSQSLSDLTQPILEDLQR---EDP- 372

  Fly   209 TELISKRTEYKHTTITTTTRTLIVSRPVELLLNEN-GE---------IIARRSPRKSRSNSLGRM 263
                                    ||..|.|:::| ||         :....:|..|:::.|...
Mouse   373 ------------------------SRSQETLISQNRGERDAGCFQEPVFCTLAPWGSQTSLLEPN 413

  Fly   264 LDVQNEIGTGGLFMEADPCSKNSLPPPPYIDDMRFIDDSSN--SQSESERNSNIHKTNKYTSKNN 326
            .......|:|   .:..|.|.....|...:...::..|:|:  .:..||.:|         .|..
Mouse   414 CPESEGRGSG---PQPSPVSSQDSSPRVLLHSPKWPQDASHLLQKDRSELSS---------LKEE 466

  Fly   327 NNDSKRESQQSNLCESCRMLLD----RNYINTEQSDNLVILRRPSKQIKDELCEVVSEMEAL--D 385
            ..:.....:|...||......|    :::::...::.|.....|..|..:|.....|..|.|  |
Mouse   467 ETEEVPSLRQEAECEDTSRSEDASANQHHVHLASAEGLPESPMPQAQSPEEGWRPSSSREKLAND 531

  Fly   386 VPEDCKHSNKDKQMSIGRKKFNMDPKKGIEYLVENRLLRHDPQDVAHFLYKGEGLNKTAIGDYLG 450
            :..|                      ||    ..|..||         ||:..|..|:.:..:|.
Mouse   532 IRND----------------------KG----AWNLALR---------LYQLNGFRKSEVAAHLR 561

  Fly   451 EKNDFNEDVLKAFVALHDFTNLILVQALRQFLWSFRLPGEAQKIDRMMETFAQRYCQLNPDIFTN 515
            :.|||:..|.:|:::...|....|.:|||.||.:..|.||.|:.:|::..|::|:...||..|.:
Mouse   562 KNNDFSRAVAEAYLSFFQFEGQSLDRALRGFLQALVLSGETQERERILYQFSKRFHYCNPGAFPS 626

  Fly   516 TDTCYVLSFAIIMLNTSLHNPSVKDKPTVDQFISMNRGINNGGDLPRGLLESLYESIRTEPFK-- 578
            .|:.:.|:.||::|||.||..::....:..:|::...|:.:|.:.|:.||::||.|||:|..:  
Mouse   627 VDSVHTLTCAIMLLNTDLHGQNIGKSMSCQEFVTNLNGLQDGRNFPKELLKALYWSIRSEKLEWA 691

  Fly   579 IPQDDGNDLMHTFFNPDKE------GWL---------------WKQG-----------GRYKSW- 610
            |.::|.:       .|:|:      |.:               :|||           |:...| 
Mouse   692 IDEEDAD-------RPEKDQPSPSAGKISSPFLQMAQDPTMPTYKQGILARKMHHIADGKKTPWG 749

  Fly   611 KRRW----FILNDNCLYYFE-------------YTTDKEPRGIIPLENISVREIHDRSKPHCFEL 658
            ||.|    .:|....||:.:             :..| ||.|:  ..:::....|...|||.|:|
Mouse   750 KRGWKMFHTLLRGMVLYFLKGEGQWLDGESLVGHMVD-EPVGV--HHSLASPATHYTKKPHVFQL 811

  Fly   659 FATGGADIIKACKTDSEGKVVEGKHTVYRMSAATEEDQQEWIKRLT-QSISHN--PF 712
            ..   ||                 ..:|...|.|.::...||.|:. .:.:|:  ||
Mouse   812 RT---AD-----------------WRLYLFQAPTAKEMASWIARINLAAATHSAPPF 848

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
stepNP_001036375.2 Sec7 397..577 CDD:279680 53/179 (30%)
PH_GRP1-like 592..710 CDD:269954 32/168 (19%)
PH 596..708 CDD:278594 31/162 (19%)
Psd4NP_001342160.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 27..66
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 145..189
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 287..386 23/126 (18%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 407..525 21/129 (16%)
Sec7 510..688 CDD:238100 61/212 (29%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 694..714 4/26 (15%)
PH_EFA6 722..849 CDD:270107 32/150 (21%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 951..1005
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5307
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

Return to query results.
Submit another query.