DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment step and max-1

DIOPT Version :9

Sequence 1:NP_001036375.2 Gene:step / 35425 FlyBaseID:FBgn0086779 Length:727 Species:Drosophila melanogaster
Sequence 2:NP_001367137.1 Gene:max-1 / 179794 WormBaseID:WBGene00003143 Length:1099 Species:Caenorhabditis elegans


Alignment Length:659 Identity:125/659 - (18%)
Similarity:218/659 - (33%) Gaps:226/659 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly   182 LSTQTVNCSDVTTKVTEVQRLPCDEPNTELISKRTEYKHTTITTTTRTLIVSRPVELLLNENGEI 246
            |..|.:.|:      |::|.|......:..|....|...    :.|.||.|.|......:::| :
 Worm    42 LRAQNLRCT------TQLQMLRSFTEKSRKIKAEMEMSR----SITGTLPVLRDENRTSDDSG-L 95

  Fly   247 IARRSPRKSRSNSLGRMLD-VQNE--------IGTGGLFMEADPCSKNSLPPP------------ 290
            .:..:.||..|.|:..... ||.:        ...|....|:.||...:.|.|            
 Worm    96 TSDDADRKQMSVSISECTPRVQRKAARTMLKNTSQGSSTSESSPCEDEAKPMPLPRRIHPTATER 160

  Fly   291 ----PYIDDMRF-IDDSSNSQSESE-RNS--------NIHK---------------TNKYTSKN- 325
                .|.:|..: |::||..:.|.: ||.        |:|:               .::.|.|. 
 Worm   161 DSLNSYAEDYEYDIEESSFERHEEQVRNENEKYVDYVNLHEFVAIKDDKVVYSEIVKHRSTEKEY 225

  Fly   326 -----NNNDSKRESQQSNLCESCRMLLDRNYINTEQSDNLVILRRPSKQIKDELCEVVSEMEALD 385
                 ::...:.|::.....|.|..::|       .:|:......||          ||.....|
 Worm   226 LPALPSHQPRQWENRLIQAAEKCLSVID-------GADSEGTSTGPS----------VSPYHVSD 273

  Fly   386 VPEDCKHSNKDKQMSIGRKKF-----NMDPK--------KGIEYLVENRLLRHD---PQDVAHFL 434
            |   .:.|:.::..|.|.:|.     |..|:        .|..|.:.:..|..|   |.|.:...
 Worm   274 V---SRISSNNRTESPGSRKSSKLSRNSSPRVPSHHSYEDGAAYAIRDLCLGSDYYLPPDASSRC 335

  Fly   435 YKGEGLNKTAI---------GDYLGEKNDFNEDVLK-----------AFVALHD----------- 468
            ..|...::|::         ..|..:..|.....||           :|...|:           
 Worm   336 SGGTPTSRTSLIPSRETMEKSGYWTQLTDSRIKSLKRRYVVFKNGQISFYRKHNNRDEEPASKIS 400

  Fly   469 FTNLILVQALRQ--FLWSFRLPGEAQKIDRMMETFAQRYCQLNPDIFTNTDTCYVLSFAIIMLNT 531
            .:::..|..|.|  ..::|:|.....|::.|.|  ::|         |..|...:||.||  ..|
 Worm   401 ISDIRSVTKLEQQGAAYAFQLITSTDKMNFMTE--SER---------TTHDWVTILSAAI--KAT 452

  Fly   532 SLHNPSVKDKPTVDQFISMNRGINNGGDLPRGLLESLYESIRTEPFKIPQDDGNDLMHTFFNPDK 596
            :|...:.:..| :|..||                                               
 Worm   453 TLREMASRVTP-IDASIS----------------------------------------------- 469

  Fly   597 EGWLWKQGGRYKSW--KRRWFILNDNCLYYFEYTTDKEPRGIIPLENISVREIHDRSKPHCFELF 659
             |||    .|.|..  |:.:..|.:..|.:|:.:.|..|.|.:.|:...:.|.|:.::.:     
 Worm   470 -GWL----TRVKCGLSKKVFAALVNQKLMFFKNSNDLVPNGFLCLQGAQISEKHNGTEEY----- 524

  Fly   660 ATGGAD-IIKACK--------TDSEGKVVEGKHTVYRMSAATEEDQQEWIKRL-----TQSISHN 710
             :|.:| .::..|        .||....:..:..|| :...|.||:::|:..|     |.::...
 Worm   525 -SGSSDEQLETTKEHPNQRKNNDSLCVQIANEDPVY-LILRTSEDKEKWLYYLKSASGTAALCGT 587

  Fly   711 PFYDILVQR 719
            || :|||||
 Worm   588 PF-EILVQR 595

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
stepNP_001036375.2 Sec7 397..577 CDD:279680 40/228 (18%)
PH_GRP1-like 592..710 CDD:269954 28/133 (21%)
PH 596..708 CDD:278594 28/127 (22%)
max-1NP_001367137.1 PH 353..450 CDD:214574 21/109 (19%)
PH 468..579 CDD:214574 29/169 (17%)
MyTH4 662..766 CDD:395633
B41 781..996 CDD:214604
PH-like 992..1088 CDD:418428
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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