DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment step and gbf-1

DIOPT Version :10

Sequence 1:NP_001036375.2 Gene:step / 35425 FlyBaseID:FBgn0086779 Length:727 Species:Drosophila melanogaster
Sequence 2:NP_001366879.1 Gene:gbf-1 / 176609 WormBaseID:WBGene00007703 Length:1975 Species:Caenorhabditis elegans


Alignment Length:324 Identity:96/324 - (29%)
Similarity:146/324 - (45%) Gaps:69/324 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly   391 KHSNKDKQMSIGRKKFNMDPKKGIEYLVENRLLRHDPQDVAHFLYKGEGLNKTAIGDYLGEKNDF 455
            :...:.:.::.|.:.||..|||||.:|.|..:|.||.|.:..:|.....|:|.||.||:..:.  
 Worm   627 EQKKRKRLIAEGTELFNQSPKKGIAFLREKGILGHDEQSLVQWLRTNPQLDKKAIADYICNRK-- 689

  Fly   456 NEDVLKAFVALHDFTNLILVQALRQFLWSFRLPGEAQKIDRMMETFAQRYCQLNPDIFTNTDTCY 520
            :.:||.|||....|.|..|..|||.||.:||||||:.:|..:|:.|::.:.:.|.:.|.:.|..:
 Worm   690 HAEVLNAFVKSFPFENTRLDVALRMFLETFRLPGESAEIALVMQHFSEEWFRANNEPFFHVDAAF 754

  Fly   521 VLSFAIIMLNTSLHNPSVK-DKP--TVDQFISMNRGINNGGDLPRGLLESLYESIRTEPFKIPQD 582
            .||:||||||...|||..| .:|  |||.|.....|.|:..|....:|..:|::|:||...:|.:
 Worm   755 TLSYAIIMLNVDQHNPQAKRSQPPMTVDCFRRNLSGTNDSRDFDPEMLADMYQAIKTEEIVMPAE 819

  Fly   583 DGNDLMHTFFNPDKEGWLWK---------QGGRYKS---WKRRWFILNDNCLY---------YFE 626
            ....:        ||.::||         :|..|.:   |       ||:.|:         ...
 Worm   820 QKGTV--------KEDYMWKVLLRRGETAEGSFYHAPTGW-------NDHDLFAVCWGPAVAALS 869

  Fly   627 YTTDKEPRGIIPLENIS-------------VREIHDRSKPHCFEL--FAT----------GGAD 665
            |..||.....|..:.::             ::|:.|..   |..|  |.|          ||||
 Worm   870 YVFDKSEHEQILQKALTGYRKCAKIAAYYGMKEVFDNL---CIHLCKFTTLTSMRDGGAGGGAD 930

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
stepNP_001036375.2 Sec7 395..577 CDD:460178 71/184 (39%)
PH_GRP1-like 592..710 CDD:269954 24/120 (20%)
gbf-1NP_001366879.1 PLN03076 <383..>1144 CDD:215560 96/324 (30%)
Sec7 631..814 CDD:460178 71/184 (39%)
PLN03209 <1696..1810 CDD:178748
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.