DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment step and agef-1

DIOPT Version :9

Sequence 1:NP_001036375.2 Gene:step / 35425 FlyBaseID:FBgn0086779 Length:727 Species:Drosophila melanogaster
Sequence 2:NP_001021798.2 Gene:agef-1 / 173231 WormBaseID:WBGene00012386 Length:1594 Species:Caenorhabditis elegans


Alignment Length:414 Identity:125/414 - (30%)
Similarity:192/414 - (46%) Gaps:88/414 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly   315 IHKTNKYTSKNNNNDSKRESQQ-------SNLCESCRMLLD------RNYINTEQSDNLVILRRP 366
            :.||.:.|...|...:::|.::       |.|.:..:.|:|      ...|.::..|     ..|
 Worm   436 VSKTTRTTINENAPPAQKEKERAMRLLGLSCLTDLLQCLVDWWQVCEVQKITSDIDD-----AEP 495

  Fly   367 SKQIKDELCEVVSEMEALDVPEDCKHSNKDKQMSIGRKKFNMDPKKGIEYLVENRLLRHDPQDVA 431
            |:|...|..|....::           .:...|..|.:.|:..||||:::|.|:..:..|..:||
 Worm   496 SEQQHGETFEAFETLK-----------QQKNLMEQGIQIFSEKPKKGLKFLQEHGFVGTDAVEVA 549

  Fly   432 HFLYKGEGLNKTAIGDYLGEKNDFNEDVLKAFVALHDFTNLILVQALRQFLWSFRLPGEAQKIDR 496
            .|:.|.|.||||.:||:||:.::||..|:.|::...||:::.::.|||.||..||||||||||||
 Worm   550 EFMMKEERLNKTQVGDFLGDSDEFNNSVMHAYIDFLDFSSIDILAALRMFLEKFRLPGEAQKIDR 614

  Fly   497 MMETFAQRYCQLNP--DIFTNTDTCYVLSFAIIMLNTSLHNPSVKDKPTVDQFISMNRGINNGGD 559
            :|..||.||...||  .||.:.|..|||:|:||||.|.|||.:||:|.|...:|:||||||.||:
 Worm   615 LMLKFASRYLDCNPRQGIFASADAAYVLAFSIIMLTTDLHNKTVKNKMTKQGYINMNRGINEGGN 679

  Fly   560 LPRGLLESLYESIRTEPFKIPQDDGNDLMHTFFNPDKEGWLWKQGGRYKSWKRRWFILNDNCLYY 624
            :|..|||:::|.|.....|: :.....|:.:...|.       ||.                   
 Worm   680 IPVELLEAIFEDISKNEIKM-RAGATALLRSRVTPG-------QGA------------------- 717

  Fly   625 FEYTTDKEPRGIIPLENISVREIHDRSKPHCFELFATGGADIIKACKTDSEGKVVEGKHTV---- 685
              ..||||.|.:..||..::.|              |..|.:..|...|:.....:.:|.|    
 Worm   718 --LATDKERRAMAALEMEALSE--------------TARALMESASDADAYFTPAQHQHHVKPMF 766

  Fly   686 ----------YRMSAATEEDQQEW 699
                      :.:.....:|::||
 Worm   767 KICWTPCLAAFSVGVQMSDDEEEW 790

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
stepNP_001036375.2 Sec7 397..577 CDD:279680 87/181 (48%)
PH_GRP1-like 592..710 CDD:269954 20/122 (16%)
PH 596..708 CDD:278594 19/118 (16%)
agef-1NP_001021798.2 PLN03076 18..1476 CDD:215560 125/414 (30%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D815698at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.920

Return to query results.
Submit another query.