DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment step and Psd

DIOPT Version :9

Sequence 1:NP_001036375.2 Gene:step / 35425 FlyBaseID:FBgn0086779 Length:727 Species:Drosophila melanogaster
Sequence 2:NP_599197.2 Gene:Psd / 171381 RGDID:620297 Length:1023 Species:Rattus norvegicus


Alignment Length:826 Identity:179/826 - (21%)
Similarity:290/826 - (35%) Gaps:212/826 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    18 LRRQPKNKKCSPGLGGSESVGRKQPLQRSCLDLSTTRVGCDGCVS--------------LEF--- 65
            ||.:.......|..|||...|.:.|   |...|...::|.||..|              :.|   
  Rat   149 LRLEASTSDPLPAGGGSVLPGSRDP---SRGPLIPPQIGADGLYSSLPNGLGGTPEHLVMHFRGP 210

  Fly    66 ------FQSESPESR----------RSNSTFYVNTQNVSSAVFKDNRQPLLERGSGSDSSPSSVC 114
                  .|.::..||          |:...|:..:.:..|:..|...|.|...|.||........
  Rat   211 ADTGFLNQGDTWSSREVSSHAQRIARAKWEFFYGSLDPPSSGAKPPEQALPSHGVGSKQGSGVAV 275

  Fly   115 VRCSCNSITKSGDRNETPTMATPKSDIKIAL-----------------------KPPPKPRSPSM 156
            .|.:..|.|   |.::.|.....::||...|                       :||....||..
  Rat   276 GRAAKYSET---DLDKVPLRCYRETDIDEVLAEREEADSAIESQPSSEGPPGTTQPPASRPSPCP 337

  Fly   157 APYTSVATYNITKLAPDSPPPASPTLSTQTVNCSDVTTKVTEVQR--LPCDE-PNTELISKRTEY 218
            .|.:|:.:.|....|...               .||..:|.|...  .|.|. |::.|:.....:
  Rat   338 GPSSSLGSGNGDDEAGGE---------------EDVDDEVFEASEGARPGDHMPHSGLLKSPVPF 387

  Fly   219 KHTTITTTTRTLIVSRPVELLLNENGEIIARRSPRKSRSNSLGRMLDVQNEIGTGG-----LFME 278
            ...|..:.......|...|.::..:          :::..|...:..::.....|.     ...|
  Rat   388 LPGTSPSADGPDSFSCMFEAIMESH----------RAKGTSYSSLASLEALASPGPTQSPFFTFE 442

  Fly   279 ADPCSKNSLPPPPYIDDMRFIDDSSNSQSESERNSNIHKTNKYTSKNNNNDSKRESQQSNLCESC 343
            ..|......|.||....:..::..|.:.|.::        ..:|       .:||.::|   ::.
  Rat   443 MPPQPPAPRPDPPAPAPLAPLEPDSGTSSVAD--------GPWT-------QRREVEES---DAG 489

  Fly   344 RMLLDRNYI--NTEQSDNLVILRRPSKQIKDELCEVVSEMEA-LDVPEDCKHSNKDKQMSIGRKK 405
            ..|..|..:  .:...|:|.:...|... :..|.::||:.:: ||..|.....:.| .:|.|:  
  Rat   490 ATLAPRKELPSPSHSEDSLGLGAAPLGS-EPPLSQLVSDSDSELDSTERLALGSTD-TLSNGQ-- 550

  Fly   406 FNMDPKKGIEYLVENRLLRHDPQDVAHFLYKGEGLNKTAIGDYLGEKNDFNEDVLKAFVALHDFT 470
                 |..:|          ..|.:|..||:.:|..|..:..:||:.|||::.|...::....||
  Rat   551 -----KADLE----------AAQRLAKRLYRLDGFRKADVARHLGKNNDFSKLVAGEYLKFFVFT 600

  Fly   471 NLILVQALRQFLWSFRLPGEAQKIDRMMETFAQRYCQLNPDIFTNTDTCYVLSFAIIMLNTSLHN 535
            .:.|.||||.||....|.||.|:.:|::..|:|||.|.||:..::.|..:.|:.|:::|||.||.
  Rat   601 GMTLDQALRVFLKELALMGETQERERVLAHFSQRYFQCNPEALSSEDGAHTLTCALMLLNTDLHG 665

  Fly   536 PSVKDKPTVDQFISMNRGINNGGDLPRGLLESLYESIRTEPFKIPQDDGNDLMHTF--------- 591
            .::..:.|...||....|:|:|||.||.||::||.||:.|..:...|: .:|..:.         
  Rat   666 HNIGKRMTCGDFIGNLEGLNDGGDFPRELLKALYSSIKNEKLQWAIDE-EELRRSLSELADPNPK 729

  Fly   592 ------------------FNPDKEGWLWKQG-----------------GRYKSWKRRWFILNDNC 621
                              ..|:....::|.|                 |: :.||....||....
  Rat   730 VIKRVSGGSGSSSSPFLDLTPEPGAAVYKHGALVRKVHADPDCRKTPRGK-RGWKSFHGILKGMI 793

  Fly   622 LYY--FEYTTDK-----EPRGIIPLENISVREIHDRSK-PHCFELFATGGADIIKACKTDSEGKV 678
            ||.  .||...|     |.:..|.:.:.......|.|| ||.|.|..   ||             
  Rat   794 LYLQKEEYQPGKALSEAELKNAISIHHALATRASDYSKRPHVFYLRT---AD------------- 842

  Fly   679 VEGKHTVYRMSAATEEDQQEWIKRL---TQSISHNPFYDILVQRKK 721
                ..|:...|.:.|..|.||.|:   ....|..||...:..:||
  Rat   843 ----WRVFLFQAPSLEQMQSWITRINVVAAMFSAPPFPAAVSSQKK 884

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
stepNP_001036375.2 Sec7 397..577 CDD:279680 62/179 (35%)
PH_GRP1-like 592..710 CDD:269954 32/145 (22%)
PH 596..708 CDD:278594 30/139 (22%)
PsdNP_599197.2 Sec7 541..707 CDD:238100 63/183 (34%)
PH_EFA6 752..876 CDD:270107 32/144 (22%)
PH 756..864 CDD:278594 30/128 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5307
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.810

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