DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment step and Cyth3

DIOPT Version :9

Sequence 1:NP_001036375.2 Gene:step / 35425 FlyBaseID:FBgn0086779 Length:727 Species:Drosophila melanogaster
Sequence 2:XP_038944952.1 Gene:Cyth3 / 116693 RGDID:620399 Length:471 Species:Rattus norvegicus


Alignment Length:400 Identity:251/400 - (62%)
Similarity:319/400 - (79%) Gaps:10/400 - (2%)


- Green bases have known domain annotations that are detailed below.


  Fly   335 QQSNLCESCRMLLDRNYINTEQSDNLVILRRPSKQIKD-------ELCEVVSEMEALDVPEDCKH 392
            |....|:.||.:.:.  ::.|:.:.|:.:||..|::.|       |:.||::|::.|...|:.|.
  Rat    73 QADRRCKGCRKVPED--LSLEEREELLDIRRRKKELIDDIERLKYEIAEVMTEIDNLTSVEESKT 135

  Fly   393 SNKDKQMSIGRKKFNMDPKKGIEYLVENRLLRHDPQDVAHFLYKGEGLNKTAIGDYLGEKNDFNE 457
            :.::||:::|||||||||||||::|:||.||:..|:|||.|||||||||||.|||||||::|||.
  Rat   136 TQRNKQIAMGRKKFNMDPKKGIQFLIENDLLQSSPEDVAQFLYKGEGLNKTVIGDYLGERDDFNI 200

  Fly   458 DVLKAFVALHDFTNLILVQALRQFLWSFRLPGEAQKIDRMMETFAQRYCQLNPDIFTNTDTCYVL 522
            .||:|||.||:|.:|.||||||||||||||||||||||||||.||.|||..||.:|.:|||||||
  Rat   201 KVLQAFVELHEFADLNLVQALRQFLWSFRLPGEAQKIDRMMEAFASRYCLCNPGVFQSTDTCYVL 265

  Fly   523 SFAIIMLNTSLHNPSVKDKPTVDQFISMNRGINNGGDLPRGLLESLYESIRTEPFKIPQDDGNDL 587
            |||||||||||||.:|:||||.::||:||||||.|||||..||.:|||||:.||||||:||||||
  Rat   266 SFAIIMLNTSLHNHNVRDKPTAERFITMNRGINEGGDLPEELLRNLYESIKNEPFKIPEDDGNDL 330

  Fly   588 MHTFFNPDKEGWLWKQGGRYKSWKRRWFILNDNCLYYFEYTTDKEPRGIIPLENISVREIHDRSK 652
            .|||||||:||||.|.|||.|:||||||||.|||||||||||||||||||||||:|:||:.|..|
  Rat   331 THTFFNPDREGWLLKLGGRVKTWKRRWFILTDNCLYYFEYTTDKEPRGIIPLENLSIREVEDPRK 395

  Fly   653 PHCFELF-ATGGADIIKACKTDSEGKVVEGKHTVYRMSAATEEDQQEWIKRLTQSISHNPFYDIL 716
            |:||||: .:....:||||||:::|:||||.|.|||:||.:.|:::||:|.:..|||.:||||:|
  Rat   396 PNCFELYNPSHKGQVIKACKTEADGRVVEGNHVVYRISAPSPEEKEEWMKSIKASISRDPFYDML 460

  Fly   717 VQRKKKALSK 726
            ..||::..:|
  Rat   461 ATRKRRIANK 470

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
stepNP_001036375.2 Sec7 397..577 CDD:279680 134/179 (75%)
PH_GRP1-like 592..710 CDD:269954 78/118 (66%)
PH 596..708 CDD:278594 72/112 (64%)
Cyth3XP_038944952.1 Sec7 138..320 CDD:396096 134/181 (74%)
PH_GRP1-like 335..454 CDD:269954 78/118 (66%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 290 1.000 Domainoid score I1486
eggNOG 1 0.900 - - E1_COG5307
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 522 1.000 Inparanoid score I1212
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000619
OrthoInspector 1 1.000 - - otm46031
orthoMCL 1 0.900 - - OOG6_103039
Panther 1 1.100 - - LDO PTHR10663
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X419
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
109.820

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