DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment step and psd

DIOPT Version :9

Sequence 1:NP_001036375.2 Gene:step / 35425 FlyBaseID:FBgn0086779 Length:727 Species:Drosophila melanogaster
Sequence 2:XP_031762195.1 Gene:psd / 100497998 XenbaseID:XB-GENE-6467347 Length:1174 Species:Xenopus tropicalis


Alignment Length:993 Identity:200/993 - (20%)
Similarity:330/993 - (33%) Gaps:360/993 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly    27 CSPGLGGSE-----SVGRKQPLQRSCLDLSTTRVGCDGCVSLEFFQSESPESRRSNSTFYVNTQN 86
            ||| |...|     |.|.::||      :....:|....|:..|.:..|.::....||...:.|:
 Frog   100 CSP-LRSRENDPLYSPGSRKPL------VLPQNLGQSSIVTFTFVKKSSVQTLNGVSTLCDSDQD 157

  Fly    87 VSSAVFKDNRQPLLERGSGSDSSPSSVCV--------------------------------RCSC 119
            ......:|.|.|...:     ...||:|:                                :.:|
 Frog   158 KQQRQEEDQRGPCYNK-----EKESSICLEKSAVNPDCISNTELKVGSPQLKLASHSRDRTQLAC 217

  Fly   120 NSITKSGDRN-------ETPTMATPKS---------------------DIKIALKPPPKPRSPSM 156
            || .::|.|.       ::|:.|:.:.                     |:|.:...|.|..|||.
 Frog   218 NS-PQTGQRKYHSEFGIQSPSSASSQDFNLNQSVSSSSQYDCSKNLSLDLKSSTNSPLKTSSPSQ 281

  Fly   157 APYTSVATYNITKLAPD------------------------SPPPASP-------------TLST 184
            :|.       :.:||.|                        ||..:.|             :|..
 Frog   282 SPL-------LRRLANDRNACKDHITSSIQETNEESSSSVRSPRKSEPNQQADPWGFPKEVSLHA 339

  Fly   185 QTV------------NCSDVTTKVTEVQRLPCDEPN-------------TELISKRTEYKHTTIT 224
            |.:            :.....::.||:...|| .||             |:|:.....:....|.
 Frog   340 QKIAKAKWEFFYGSTDSQKEDSEQTEILSTPC-SPNASGSLEKRHCHQETDLLKHNLCHVEVEIE 403

  Fly   225 TTT---------RTLIVSRPV---------------------ELLLNENGEIIARRSPRKSRSN- 258
            ||:         .|.|:.|.:                     ::|....|...|..|.:.|.|| 
 Frog   404 TTSSVDPKPDSCETGIIRRTIKYSETDLDSVPLRCYRETNIDDILAENEGLDSAIGSQKDSESNT 468

  Fly   259 -SLGRMLDVQNE---IGTGGLF----------------MEADPCSKNS-----LP---PPPYIDD 295
             :.....:.|||   :....:|                .||....:.:     ||   |.|::..
 Frog   469 ETSAEKTNEQNEQTTVENNRVFANNPGRDNGEEDEDEVFEATKVGETNRVNAQLPIKTPLPFLLC 533

  Fly   296 MRFIDDSSNSQSESERN---SNIHKTNKYTSKNNNN--DSKRESQ---------------QSNLC 340
            .|..:|..:|.|:...|   |:..|...|:|.::.:  .|..::|               |..:|
 Frog   534 HRLSEDGMDSFSKHFENIMESHRAKGTSYSSLDSIDILSSPAQNQHSFFTFDLPTLTSETQKQIC 598

  Fly   341 ESCRML-----------LDRNYINT------EQSDNLV--------ILRRPSK------------ 368
            ::.:::           ||....:|      |:.|:.|        .||.|::            
 Frog   599 KNAQLIEDNFAPLAHLELDSGTSSTTDSAWSEREDDTVNAAGATNNALRSPTQSEDSLIIADAII 663

  Fly   369 QIKDELCEVVSEMEA-LDVPEDCKHSNKDKQMSIGRKKFNMDPKKGIEYLVENRLLRHDPQDVAH 432
            |.:..|..:.||.:: :|..|.....:.| .:|.|.|......|:                 :|.
 Frog   664 QSEPPLGNLASEFDSEMDSTERLALGSTD-TLSNGHKADQEAAKR-----------------LAK 710

  Fly   433 FLYKGEGLNKTAIGDYLGEK--NDFNEDVLKAFVALHDFTNLILVQALRQFLWSFRLPGEAQKID 495
            .||..:|..|..:..:||:|  |:|::.|.:.::....||.:.|.||||.||....|.||.|:.:
 Frog   711 RLYNLDGFKKADVARHLGKKYVNEFSKMVAEEYLKFFVFTGMSLDQALRMFLKELALMGETQERE 775

  Fly   496 RMMETFAQRYCQLNPDIFTNTDTCYVLSFAIIMLNTSLHNPSVKDKPTVDQFISMNRGINNGGDL 560
            |::..|:|||.|.|.:..|:.|..:.|:.|:::|||.||..::..:.:..:||....|:|.|.|.
 Frog   776 RILAHFSQRYHQCNSNSITSEDGVHTLTCALMLLNTDLHGHNIGKRMSCSEFIGNLEGLNGGKDF 840

  Fly   561 PRGLLESLYESIRTEPFKIPQDDGNDLMHTF-----------------------FNPDKEGWLWK 602
            ||.||::||.||:.|..:...|: .:|..:.                       |:.|.....:|
 Frog   841 PRELLKALYSSIKNEKLQWTIDE-EELRRSLSELADPNPKSIKRINSCGKPFLDFSQDPNITTYK 904

  Fly   603 QG-----------------GRYKSWKRRWFILNDNCLYY--FEYTTDKEPRGIIPLEN------- 641
            .|                 |: :.||....||....||.  .||...| |.....|:|       
 Frog   905 YGVLVRKTHADPDCKKTPRGK-RGWKTFHGILKGMILYLQKEEYKPGK-PLSEEDLKNAISIHHS 967

  Fly   642 ISVREIHDRSKPHCFELFATGGADIIKACKTDSEGKVVEGKHTVYRMSAATEEDQQEWIKRL--- 703
            ::.|......:|:.|.|..   ||                 ..|:...|...|....||.|:   
 Frog   968 LATRASDYNKRPNVFYLRT---AD-----------------WRVFLFQAQNPEQMHSWITRINVV 1012

  Fly   704 TQSISHNPFYDILVQRKK 721
            ....|..||...:...||
 Frog  1013 AAMFSAPPFPAAIGSYKK 1030

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
stepNP_001036375.2 Sec7 397..577 CDD:279680 59/181 (33%)
PH_GRP1-like 592..710 CDD:269954 30/146 (21%)
PH 596..708 CDD:278594 27/140 (19%)
psdXP_031762195.1 Sec7 701..857 CDD:238100 56/172 (33%)
PH_EFA6 897..1022 CDD:270107 30/146 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

Return to query results.
Submit another query.