DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment step and arfgef1

DIOPT Version :9

Sequence 1:NP_001036375.2 Gene:step / 35425 FlyBaseID:FBgn0086779 Length:727 Species:Drosophila melanogaster
Sequence 2:XP_012820711.2 Gene:arfgef1 / 100492065 XenbaseID:XB-GENE-6050637 Length:1859 Species:Xenopus tropicalis


Alignment Length:631 Identity:159/631 - (25%)
Similarity:255/631 - (40%) Gaps:157/631 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    37 VGRKQPLQRSCLDLSTTRV-------------GCDGC-VSLEFFQSESPESRRSNSTFYVNTQNV 87
            ||.::.::..|    |.|:             |..|. :|:.:..| .|:.|.|          |
 Frog   330 VGEEETVRAEC----TARISEDPSDGDSIHANGIPGTPISMAYTPS-LPDDRLS----------V 379

  Fly    88 SSAVFKDNRQPLLERGSGSDSSPSSVCVRCSCNSITKSGDRNETPTMATPKSDIKIALKP----P 148
            ||    ::.|...|.|:.|..:|.:           |.....:.......:|..|:::||    |
 Frog   380 SS----NDTQARKESGNTSAPTPGA-----------KFSHILQKDAFLVFRSLCKLSMKPLSDGP 429

  Fly   149 PKPRSPSMAPYTSVATYNITKLAPDSPPPASPTLSTQTVNCSDV------------TTKVTEVQR 201
            |.|:|..:.  :.|.:..:......:   |.|...|..:..:.:            .:.|.||..
 Frog   430 PDPKSHELR--SKVLSLQLLLSILQN---AGPVFKTNEMFINAIKQYLCVALSKNGVSSVPEVFE 489

  Fly   202 LPCD-------------EPNTELISKRT------------EYKHTTITTTTRTLIVSRP-VELLL 240
            |...             :...|:..|..            ::|...|.|.||....::. |::.:
 Frog   490 LSLSIFLTLLSNFKLHLKMQIEVFFKEIFLYILETSTSSFDHKWMVIQTLTRICADAQSVVDIYV 554

  Fly   241 NENGEIIARRSPRKSRSNSLGRMLDVQNEIGTGGLFMEADPCSKNSLPPPPYIDDMRFIDDSSNS 305
            |.:.::.|        :|...|:::..::|..|....|.                     ..||.
 Frog   555 NYDCDLNA--------ANIFERLVNDLSKIAQGRGSQEL---------------------GMSNV 590

  Fly   306 QSESERNSNIH------------------KTNKYTSKNNNNDSKRESQQSNLCESCRMLLDRNYI 352
            |..|.|...:.                  ..|..|:......|::::..:...|:.......|.:
 Frog   591 QELSLRKKGLECLVSILKCMVEWSKDLYVNPNSQTTLGQEKPSEQDTHDTKHPETINRYGSLNSL 655

  Fly   353 NTEQSDNLVILRRPSKQIKDELCEVVSEMEALDVPEDCKHSNKDKQ-MSIGRKKFNMDPKKGIEY 416
            ::..|..              :....::|...|.||..:...:.|: :..|...||..||:||:|
 Frog   656 DSTASSG--------------IGSYSTQMSGTDNPEQFEVLKQQKEIIEQGIDLFNKKPKRGIQY 706

  Fly   417 LVENRLLRHDPQDVAHFLYKGEGLNKTAIGDYLGEKNDFNEDVLKAFVALHDFTNLILVQALRQF 481
            |.|..:|...|.|:|.||::.|.|:.|.:|::||:.:.||::|:.|:|..|||.....|.|||.|
 Frog   707 LQEQGMLGTSPDDIAQFLHQEERLDSTQVGEFLGDNDKFNKEVMYAYVDQHDFQGKDFVSALRMF 771

  Fly   482 LWSFRLPGEAQKIDRMMETFAQRY--CQLNPDIFTNTDTCYVLSFAIIMLNTSLHNPSVKDKPTV 544
            |..||||||||||||:||.||.||  |.....:|.:.||.|||:::||||.|.||:|.||.|.|.
 Frog   772 LEGFRLPGEAQKIDRLMEKFAARYLECNQGQTLFASADTAYVLAYSIIMLTTDLHSPQVKSKMTK 836

  Fly   545 DQFISMNRGINNGGDLPRGLLESLYESIRTEPFKIPQDDGNDLMHT 590
            :|:|.||||||:..|||...|.::|..|..:  ||...:..:|..|
 Frog   837 EQYIKMNRGINDSKDLPEEYLSAIYNEIAGK--KISMKETKELAIT 880

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
stepNP_001036375.2 Sec7 397..577 CDD:279680 88/182 (48%)
PH_GRP1-like 592..710 CDD:269954
PH 596..708 CDD:278594
arfgef1XP_012820711.2 PLN03076 6..1753 CDD:215560 159/631 (25%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D815698at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.010

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