DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment step and arfgef2

DIOPT Version :9

Sequence 1:NP_001036375.2 Gene:step / 35425 FlyBaseID:FBgn0086779 Length:727 Species:Drosophila melanogaster
Sequence 2:XP_002933226.3 Gene:arfgef2 / 100492055 XenbaseID:XB-GENE-6041969 Length:1792 Species:Xenopus tropicalis


Alignment Length:657 Identity:173/657 - (26%)
Similarity:258/657 - (39%) Gaps:176/657 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly    70 SPESRRSNSTFYVNTQNVSSAVFKDNRQPLLERGSGSDSSPSSVCVRCSCN------SITKSGDR 128
            ||..:..|:...:|...|.......|.:..:|...|::.:..:    .|||      |:::....
 Frog   230 SPNLKHKNNNHLLNELPVPGNDNSTNPEQGMEAAEGNEHTEGA----DSCNVTTDVESVSEISAN 290

  Fly   129 NETPTMATPKSDIKIALKPPPKPRSPSMAPYTSVATYNITKLAPDSPPPASPTLSTQTVNCSDVT 193
            .|||  |....|...::....:.|.......||.|.      :.|.||..:...|.||...||..
 Frog   291 EETP--ADIIEDTTDSVCKEQEEREAVDEAATSEAE------SGDLPPTLNLPESIQTNGISDDG 347

  Fly   194 TKVTEVQRLPCDEPNTELISKRTEYKHTTITTTTRTLIVSRPVELLLNENGEIIARRSPR----K 254
            ..::....|..|    .|..:.:..|.:.|......|:.....:|.:...||  ....|:    :
 Frog   348 QSISSTDNLESD----SLHGQNSGAKFSHILQKDAFLVFRSLCKLSMKPLGE--GPPDPKSHELR 406

  Fly   255 SRSNSLGRMLDVQNEIG----TGGLFMEADP---C---SKNSLPPPPYIDDMR------------ 297
            |:..||..:|.|....|    |..:|:.|..   |   |||.:...|.:.::.            
 Frog   407 SKIISLQLLLSVLQNAGPVFRTHEMFINAIKQYLCVALSKNGVSSVPDVFELSLAIFLALLSHFK 471

  Fly   298 --------------FIDDSSNSQSESERNSNIHKTNKYTSKNNNNDSKRESQQSNLCESCRMLLD 348
                          |::....|.|..|....:.:|                 .:.:|...:.::|
 Frog   472 MHLKMQVEVFFKEIFLNILETSSSSFEHKWMVIQT-----------------LTRICADAQCVVD 519

  Fly   349 RNYINTEQSDNLV-ILRRPSKQIK----------------DELCEVVSEMEAL------------ 384
             .|:|.:...|.. |..|....:.                .|||.....:|.|            
 Frog   520 -IYVNYDCDLNAANIFERLVNDLSKIAQGRSGHELGMTPTQELCLRKKGLECLVSILKCMVEWSK 583

  Fly   385 DV-----------------PEDCKH------------SNKDKQMSIG------------------ 402
            |:                 ||.|::            |:||..:|.|                  
 Frog   584 DLYVNPNFQSNLGQEKNSDPESCENKTPETTGRRYSVSSKDSTVSSGIGSTSTQTSIPDDPEQFE 648

  Fly   403 ----RKK--------FNMDPKKGIEYLVENRLLRHDPQDVAHFLYKGEGLNKTAIGDYLGEKNDF 455
                :|:        ||..||:|::||.|..:|...|||:|.||::.:.|:.|.||::|||.|.|
 Frog   649 VIKQQKEIIEHGIELFNKKPKRGMQYLQEQGMLGTMPQDIAQFLHQEDRLDFTQIGEFLGENNRF 713

  Fly   456 NEDVLKAFVALHDFTNLILVQALRQFLWSFRLPGEAQKIDRMMETFAQRY--CQLNPDIFTNTDT 518
            |.:|:.|:|...||.:...|.|||.||..||||||||||||:||.||.||  |.....:|.:.||
 Frog   714 NREVMYAYVDQLDFCDKDFVSALRMFLEGFRLPGEAQKIDRLMEKFAARYLECNQGQTLFASADT 778

  Fly   519 CYVLSFAIIMLNTSLHNPSVKDKPTVDQFISMNRGINNGGDLPRGLLESLYESIRTEPFKIPQDD 583
            .|||:::||||.|.||:|.||:|.|.:|:|.||||||:..|||...|.|:|:.|  |..||...:
 Frog   779 AYVLAYSIIMLTTDLHSPQVKNKMTKEQYIKMNRGINDSKDLPEEYLSSIYDEI--EGKKIAMKE 841

  Fly   584 GNDLMHT 590
            ..:  ||
 Frog   842 TKE--HT 846

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
stepNP_001036375.2 Sec7 397..577 CDD:279680 92/211 (44%)
PH_GRP1-like 592..710 CDD:269954
PH 596..708 CDD:278594
arfgef2XP_002933226.3 PLN03076 6..1706 CDD:215560 173/657 (26%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D815698at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.010

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