DRSC/TRiP Functional Genomics Resources

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Protein Alignment step and tas2r39

DIOPT Version :9

Sequence 1:NP_001036375.2 Gene:step / 35425 FlyBaseID:FBgn0086779 Length:727 Species:Drosophila melanogaster
Sequence 2:NP_001165499.1 Gene:tas2r39 / 100335091 XenbaseID:XB-GENE-22069250 Length:317 Species:Xenopus tropicalis


Alignment Length:74 Identity:15/74 - (20%)
Similarity:25/74 - (33%) Gaps:21/74 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    29 PGLGGS------ESVGRKQPLQRSCLDLSTTR---------------VGCDGCVSLEFFQSESPE 72
            ||:..:      .::...|.|:.....||.|.               ||...|:.|:...|:|..
 Frog   147 PGIWSTYRDPPISNISNNQSLEMELPKLSFTYLFYSNIIGCSLPLVFVGISNCLILKSLISKSTM 211

  Fly    73 SRRSNSTFY 81
            ..::.|..|
 Frog   212 FEKNKSDVY 220

Known Domains:


Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.

GeneSequenceDomainRegion External IDIdentity
stepNP_001036375.2 Sec7 397..577 CDD:279680
PH_GRP1-like 592..710 CDD:269954
PH 596..708 CDD:278594
tas2r39NP_001165499.1 7tm_GPCRs 8..286 CDD:391938 15/74 (20%)
TM helix 1 9..33 CDD:341315
TM helix 2 45..66 CDD:341315
TM helix 3 83..105 CDD:341315