DRSC/TRiP Functional Genomics Resources

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Protein Alignment step and sh2d3a

DIOPT Version :9

Sequence 1:NP_001036375.2 Gene:step / 35425 FlyBaseID:FBgn0086779 Length:727 Species:Drosophila melanogaster
Sequence 2:XP_002665109.4 Gene:sh2d3a / 100331568 ZFINID:ZDB-GENE-140401-1 Length:806 Species:Danio rerio


Alignment Length:722 Identity:131/722 - (18%)
Similarity:219/722 - (30%) Gaps:300/722 - (41%)


- Green bases have known domain annotations that are detailed below.


  Fly    10 SISNWF---------SSLRRQPKNKKCSPGLGGSESV--------GRKQPLQRSCLDLSTTRVGC 57
            |||.|.         |:|.:|      ..||.|.:||        |.:.|..|..:.....:..|
Zfish     5 SISRWLNRIGLPQYTSALEKQ------YYGLEGLQSVTEEDLRLMGVEDPDHRVKILAELQKQQC 63

  Fly    58 D---GCVSLEFFQSESPESRRSNSTFYVNTQNVSSAVFKDNRQPLLERGSGSDSSPSSVCVRCSC 119
            |   .|.:.......|.:.:|::             :|:.:..|.|.|   .|...|:.|:    
Zfish    64 DTENNCTTGTMSSRHSLDLKRTD-------------LFRHSIIPRLRR---RDKRVSASCI---- 108

  Fly   120 NSITKSGDRNETPTMATPKSDIKIALKPPPKPRSPSMAPYTSVATYNITKLAPDSPPPAS---PT 181
                                                             :|.|:...|.|   |.
Zfish   109 -------------------------------------------------QLRPEDHAPCSKHKPR 124

  Fly   182 LSTQTVNCSDVTTKVTEVQRLPCDEPNTELISKRTEYKHTTITTTTRT------LIVSRPVELLL 240
            ..:.|...|.|.:.:.::          :.:.|..|.:....|...|:      .:.....|.||
Zfish   125 RRSVTAFISQVFSGLRDM----------DALKKELEEELKLSTEDLRSHAWYHGQLQREAAEQLL 179

  Fly   241 NENGEIIARRS----------------------------PRKSRSNSLGRMLD---------VQN 268
            ..:||.:.|.|                            |::..:..|.:..:         ::.
Zfish   180 GRDGEFLVRDSSTSAGDYVLTCMWKNQPMHFKIIRITLRPKQGYTRELFQFENDQFDNIPALIRF 244

  Fly   269 EIG--------TGGLFMEADPCSKNSLPPPPYIDDMRFIDD-----SSNS---QSESERNSNIHK 317
            .:|        ||.:..:  |.:: :||       :|.|.:     ||::   :|:|:|.| :..
Zfish   245 HVGGRRPISHSTGAVIFQ--PITR-TLP-------LRIISERQAARSSSAHLMRSQSKRRS-LSS 298

  Fly   318 TNKYTSK-NNNNDSKRESQQSNLCESCRMLLDRNYINTEQSDNLV-------------------- 361
            :.|.|.: |.||..:..||.:||     ..:.|.::.:.|||:.:                    
Zfish   299 SQKDTLQVNTNNLLRSGSQPANL-----ETVGRPFLQSAQSDSNLRTGVPQSCQSQDSDPAPVSP 358

  Fly   362 ILRRPSKQIKDEL--CEVVSEMEALDVPEDC-----KHSN---KDKQMSIGRKKFNMDPKKGIEY 416
            :.|..|:.:....  |...:...||.|...|     .||.   |..::||.......||:.    
Zfish   359 VFRTGSEPVLSPAASCATPAGQSALGVSPLCGSDGQLHSRAPPKPLRISIIFSPTQTDPES---- 419

  Fly   417 LVENRLLRHDPQDV---------AHFLYKGEGLNKTAIGDYLGEKNDFNEDVLKAFVALHDFTNL 472
                     ||.||         ...|.||......|           .|...|:...|.| |:.
Zfish   420 ---------DPADVYGELVPQVPITMLPKGHAARLRA-----------QEQKWKSRARLTD-TSF 463

  Fly   473 ILVQALRQFLWSFRLPGEAQKIDRMMETFAQR----YCQLNPDIFTNTDTCYVL-SFAIIML--- 529
                   .||.:.|:..|..:.:|...:..|:    :|...|.  |.|.:|:.| .|..::|   
Zfish   464 -------GFLEAQRVEEERVEEERRSGSELQQEERDWCFERPQ--TETSSCFRLDEFRSLLLPDN 519

  Fly   530 NTSLHN---PSVKD-------KPTVDQFISMN----------------RGIN---------NGGD 559
            |..|..   |.||:       :.|....:|:|                .|:.         :||.
Zfish   520 NRPLDQSVLPKVKELLTQTDARTTALHMLSVNCQVARVTGVTAEQKRIMGVETGLELVTLPHGGQ 584

  Fly   560 LPRGLLE 566
            |.:.|||
Zfish   585 LRQDLLE 591

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
stepNP_001036375.2 Sec7 397..577 CDD:279680 46/222 (21%)
PH_GRP1-like 592..710 CDD:269954
PH 596..708 CDD:278594
sh2d3aXP_002665109.4 None
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

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